Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq109 107 1e-18 seq1681 102 5e-17 seq2406 96.9 2e-15 >seq109 Length=140612 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||||||||| || || || ||||| || ||||| ||||| || Sbjct 74634 CCACCACGAAGACGCAACACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGAG 74693 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | |||||| ||||| || || ||||| || || || | || Sbjct 74694 AGAGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGGA 74753 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| ||| || ||| | || || | ||| ||| || ||| || Sbjct 74754 ATACCCTCCTTATCT-CGAATTTTAGCCTTCACATTCTCAATATAATCTGCGGGCTCAAC 74812 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || ||||| ||||| |||||||||||||| Sbjct 74813 TTCAAGAGTGATAGTTTTGCCAGTTAAGGTTTTGACAAAAATCTGCAT 74860 >seq1681 Length=28542 Score = 102 bits (112), Expect = 5e-17 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| || | ||| | ||| ||||| || || ||||| || || || ||| Sbjct 24245 CCGCCACGAAGGCGAAGCACAAGATGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGAA 24304 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || ||||||| ||||| ||||| || ||||| | |||||| || || || || Sbjct 24305 AGTGTACGACCGTCTTCCAGTTGCTTACCAGCGAATATGAGACGCTGCTGATCTGGTGGA 24364 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT-TCGCTCTCCA 34657 | ||| || ||||| |||||| | || || | ||| ||||| ||| ||||| Sbjct 24365 ATTCCTTCTTTGTCCTGGATCTTC-GCCTTCACATTCTCAATCGTGTCACTCGG-CTCCA 24422 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | |||| ||||||||||| || || | |||||||| Sbjct 24423 CCTCCAAAGTTATCGTTTTGCCCGTGAGTGTTTTCAC 24459 Score = 96.9 bits (106), Expect = 2e-15 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| ||||| || |||||||| || || || || || | || || Sbjct 24811 AGACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGG 24870 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | |||||| || ||||| || | |||||| || || || || | ||| ||| Sbjct 24871 CCATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCC 24930 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT---CTCCACTTCCAC 34664 ||||| |||| || | ||||| | ||||| ||||| ||| ||||| | Sbjct 24931 TTGTCCTGGATC-TTCGCCTTAACATTCTCGATTGT---ATCGCTAGGCTCGACTTCAAG 24986 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| ||||| | || || |||||||||||||| Sbjct 24987 TGTAATGGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || || ||||| || || || || || || | ||||| ||||| || || ||||| Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | ||| |||||||| || || | |||||||||||| ||||| |||| Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 34636 AAAATTGTGT--CTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 ||| || | ||| | ||| ||||| | || || |||||||| || | || |||| Sbjct 28422 TCAATGGTATCGCTTGG--CTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCA 28365 Query 34694 CAAAAATCTGCAT 34706 ||||||| ||||| Sbjct 28364 CAAAAATTTGCAT 28352 >seq2406 Length=17766 Score = 96.9 bits (106), Expect = 2e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||| || ||| |||||||||||||||||| || ||| Sbjct 17636 CCACCACGAAGACGAAGTACAAGATGTAGGGTGGACTCCTTTTGAATGTTATAGTCAGAA 17695 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| ||||| || || ||||| || | |||||||||||| || || Sbjct 17696 AGAGTACGACCATCTTCCAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGA 17755 Query 34600 ACTCCCTCCTT 34610 | |||||||| Sbjct 17756 ATGCCCTCCTT 17766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314676244481030