Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq109 140 3e-28 seq1681 131 1e-25 seq13481 84.2 2e-11 seq2406 84.2 2e-11 >seq109 Length=140612 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| | || ||||| |||| ||||||||||| || || | Sbjct 74860 ATGCAGATTTTTGTCAAAACCTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCCGCA 74801 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||||||| ||| || || || || || | ||||| Sbjct 74800 GATTATATTGAGAATGTGAAGGCTAAAATTCGAGATAAGGAGGGTATTCCTTCAGATCAG 74741 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||||||||||||||||||| | || | || ||||||||| Sbjct 74740 CAACGTTTGATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACTCTCTCGGATTACAAC 74681 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || || | || ||||| |||||| | || ||||| Sbjct 74680 ATCCAGAAGGAATCTACACTTCACTTGGTGTTGCGTCTTCGTGGTGG 74634 >seq1681 Length=28542 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| ||||| ||||| || | ||||| |||||||| || || | Sbjct 25028 ATGCAGATTTTTGTAAAGACTCTTACCGGAAAAACCATTACACTTGAAGTCGAGCCTAGC 24969 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || || || ||||| ||||| || || || ||||| Sbjct 24968 GATACAATCGAGAATGTTAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 24909 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||||||||| || || | || | || || ||||| Sbjct 24908 CAGCGTCTTATCTTTGCAGGCAAACAATTAGAGGATGGCCGCACTTTGTCGGACTACAAT 24849 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || ||| | || ||||| |||||| | || |||||||| Sbjct 24848 ATCCAAAAGGAATCTACCCTCCACTTGGTGTTGCGTCTCCGTGGTGGCAT 24799 Score = 109 bits (120), Expect = 5e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || ||||| || || ||||| | || ||| | || ||||| ||| ||| |||||||| Sbjct 24459 GTGAAAACACTCACGGGCAAAACGATAACTTTGGAGGTGGAGCCGAGTGACACGATTGAG 24400 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | || || || || || ||||||||||| || ||||| ||||| |||||| | ||| Sbjct 24399 AATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCACCAGATCAGCAGCGTCTCATA 24340 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | ||| || || ||| |||||||| || || |||| || ||||| ||||| || || Sbjct 24339 TTCGCTGGTAAGCAACTGGAAGACGGTCGTACACTTTCGGACTACAATATTCAGAAAGAA 24280 Query 27180 TCGAC 27184 || || Sbjct 24279 TCTAC 24275 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || || |||| ||||| ||||| || || | Sbjct 28352 ATGCAAATTTTTGTGAAGACTCTTACTGGTAAAACTATCACTCTCGAAGTTGAGCCAAGC 28411 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || ||||||||||| || ||||| || || || ||| Sbjct 28412 GATACCATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAA 28471 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || ||||| ||| ||||||| || ||| | ||||| |||||| Sbjct 28472 CAACGTCTTATCTTTGCTGGCAAGCAACTGGAAGATGGTCGTACCCTCTCCGACTACAAC 28531 Query 27168 ATTCAAAAGGA 27178 || || || || Sbjct 28532 ATCCAGAAAGA 28542 >seq13481 Length=537 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| ||||| || || || | ||||| |||||||| || || Sbjct 404 ATGCAGATTTTTGTAAAGACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTAGT 463 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || || ||||||||||| || || || ||||| Sbjct 464 GATACAATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 523 Query 27108 CAGCGTTTAAT 27118 ||||| |||| Sbjct 524 CAGCGACTAAT 534 >seq2406 Length=17766 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || || ||||| || || || ||||||||| | || | || ||||| ||| ||||||| Sbjct 17766 AAGGAGGGCATTCCCCCAGACCAACAGCGTCTTATCTTTGCTGGCAAGCAACTGGAAGAT 17707 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 || || |||| || || ||||||||||||||||| ||| ||||| | || | ||| Sbjct 17706 GGTCGTACTCTTTCTGACTATAACATTCAAAAGGAGTCCACCCTACATCTTGTACTTCGT 17647 Query 27204 TTGCGGGGTGG 27214 | || ||||| Sbjct 17646 CTTCGTGGTGG 17636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434842778563200