Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1681 145 2e-29 seq2406 111 4e-19 seq13481 93.3 1e-13 >seq1681 Length=28542 Score = 145 bits (160), Expect = 2e-29 Identities = 150/195 (77%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 ||||| |||||||| || || | ||||| | ||||||||||| |||||||| || ||| Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 ||||| ||||||||||| || |||| || |||||||| || ||||| || || || Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 211044 TCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTT 211100 || ||||| || |||| ||||| ||||||||||| || || || || |||||||| Sbjct 28422 TCAATGGTATC---GCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTC 28366 Query 211101 ACAAACACCTGCATT 211115 ||||| | |||||| Sbjct 28365 ACAAAAATTTGCATT 28351 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| |||||||| || ||||| || || || || |||| ||| || Sbjct 24250 ACGAAGGCGAAGCACAAGATGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGAAAGTGT 24309 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||| ||||| || ||||| || || || || || || || |||| ||| Sbjct 24310 ACGACCGTCTTCCAGTTGCTTACCAGCGAATATGAGACGCTGCTGATCTGGTGGAATTCC 24369 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| |||||||||||||| ||||| || || || |||||| || ||||| | Sbjct 24370 TTCTTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCCACCTCCAA 24429 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||| ||||| || |||||||| || || || Sbjct 24430 AGTTATCGTTTTGCCCGTGAGTGTTTTCAC 24459 Score = 127 bits (140), Expect = 5e-24 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || || || |||||||| || || |||| | || | ||||| || | || Sbjct 24825 GTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCATCCTCTAATTG 24884 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||||| |||||||| || || || || ||||||| ||||||||||||||||||||| Sbjct 24885 TTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTT 24944 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCC 211087 || || || ||||| || || ||| || || || || || || || ||||| Sbjct 24945 CGCCTTAACATTCTCGATTGTATC---GCTAGGCTCGACTTCAAGTGTAATGGTTTTTCC 25001 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||||||||| | |||||| Sbjct 25002 GGTAAGAGTCTTTACAAAAATCTGCAT 25028 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || || || || || || || |||| ||| ||||||||||||||||| |||||| || Sbjct 24670 ATTAGTCGCTGCTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTCGCTTTCACATTC 24729 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 || || |||||| || ||||| | ||| ||||| || |||||||| || || ||| Sbjct 24730 TCAATCGTGTCACTCGGCTCCACCTCCAAAGTTATCGTTTTGCCCGTGAGTGTTTTCACA 24789 Query 211104 AACACCTGCAT 211114 || | ||||| Sbjct 24790 AAGATTTGCAT 24800 >seq2406 Length=17766 Score = 111 bits (122), Expect = 4e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| || || |||||||| ||||| |||||||| || | ||| || Sbjct 17641 ACGAAGACGAAGTACAAGATGTAGGGTGGACTCCTTTTGAATGTTATAGTCAGAAAGAGT 17700 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| |||||||| || |||||||| || |||||||| || |||| || Sbjct 17701 ACGACCATCTTCCAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCC 17760 Query 211013 TTCCTT 211018 ||||| Sbjct 17761 CTCCTT 17766 >seq13481 Length=537 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 210981 AAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACG 211040 ||||| || || || || || ||||||| |||||| |||||||||||||| |||||| Sbjct 537 AAGATTAGTCGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCTTTCACA 478 Query 211041 TTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTT 211100 || || || || ||| || || || || || || || ||||| || ||||||||| Sbjct 477 TTCTCAATTGTATCACTAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTCTTT 418 Query 211101 ACAAACACCTGCAT 211114 ||||| | |||||| Sbjct 417 ACAAAAATCTGCAT 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158945413757150