Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq109 116 3e-21 seq1681 104 2e-17 >seq109 Length=140612 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||| | || || ||||| |||||||| |||||||| || | Sbjct 74860 ATGCAGATTTTTGTCAAAACCTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCCGCA 74801 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | |||| ||| | || | |||| | | || || || ||| | || ||||||| Sbjct 74800 GATTATATTGAGAATGTGAAGGCTAAAATTCGA-GATAAGGAGGGTATTCCTTCAGATCA 74742 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || || |||||||||||| ||||||| | || ||| | |||||||| Sbjct 74741 GCAACGTTTGATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACTCTCTCGGATTACAA 74682 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| || || || || ||| | || || || || Sbjct 74681 CATCCAGAAGGAATCTACACTTCACTTGGTGTT 74649 >seq1681 Length=28542 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || || || || || ||||| ||||||||||||||||| | | Sbjct 28351 AATGCAAATTTTTGTGAAGACTCTTACTGGTAAAACTATCACTCTCGAAGTTGAGCCAAG 28410 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| | |||| || ||| ||||| || || | || ||||| || Sbjct 28411 CGATACCATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCA 28470 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||| ||||||||||| | || || | ||| ||||| Sbjct 28471 ACAACGTCTTATCTTTGCTGGCAAGCAACTGGAAGATGGTCGTACCCTCTCCGACTACAA 28530 Query 23790 CATACAAAAAGA 23801 ||| || ||||| Sbjct 28531 CATCCAGAAAGA 28542 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 23623 GTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA- 23681 || ||||| |||||||| |||||||| ||| | || || || | | ||||| |||| Sbjct 24459 GTGAAAACACTCACGGGCAAAACGATAACTTTGGAGGTGGAGCCGAGTGACACGATTGAG 24400 Query 23682 AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAAT 23741 ||| | || | || | | ||||||||||| | || |||||||| |||||| | || Sbjct 24399 AATGTGAAGGCGAAGA-TCCAGGACAAAGAAGGAATTCCACCAGATCAGCAGCGTCTCAT 24341 Query 23742 ATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACAACATACAAAAA 23799 ||| || || || ||||||||||||| || |||||| | || ||||| || || ||| Sbjct 24340 ATTCGCTGGTAAGCAACTGGAAGACGGTCGTACACTTTCG--GACTACAATATTCAGAAA 24283 Query 23800 GAGTCCAC 23807 || || || Sbjct 24282 GAATCTAC 24275 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || || |||||||| || || || ||||| || | | Sbjct 25028 ATGCAGATTTTTGTAAAGACTCTTACCGGAAAAACCATTACACTTGAAGTCGAGCCTAGC 24969 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| |||| | || || ||||| ||||| | || |||||||| Sbjct 24968 GATACAATCGAGAATGTTAAGGC-GAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCA 24910 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||||||| | || || | |||||||| || ||||| Sbjct 24909 GCAGCGTCTTATCTTTGCAGGCAAACAATTAGAGGATGGCCGCACTTTGTCGGACTACAA 24850 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 24849 TATCCAAAAGGAATCTAC 24832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337952297866280