Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1681 107 5e-18 seq2988 93.3 1e-13 >seq1681 Length=28542 Score = 107 bits (118), Expect = 5e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | |||||| || ||||| ||||||| |||||| || | |||||| Sbjct 24807 ACGGAGACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGT 24866 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| |||| || || || || |||||||| || || || || || ||||| || Sbjct 24867 GCGGCCATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCC 24926 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 ||||||||| |||||||| ||| ||| ||||| || || Sbjct 24927 TTCCTTGTCCTGGATCTTCGCCTTAACATTCTCGATTGTATC 24968 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 ||||| |||| ||||| |||| | || | |||||||| || ||||| ||||| ||| Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 ||||| ||||||||||| || ||||| || ||||||||||| ||||| ||| ||| Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 || ||||| || | || || || | ||||| || || || || | ||| || | Sbjct 28422 TCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCACA 28363 Query 225703 AACACTTGCATT 225714 || | ||||||| Sbjct 28362 AAAATTTGCATT 28351 >seq2988 Length=12531 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||| || || ||||||||||| ||||| || ||||| |||||||| Sbjct 997 GAAAATTTGACCATCAGTGATGGAAATAACATTTGTTGGGATGTAGGCAGACACATCACC 1056 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||| || || | |||||| | || || | || || |||||| Sbjct 1057 AGCTTGAGTCTCAATAACAGGAAGAGCAGTCAAGGAACCGCCACCA 1102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192318664853540