Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2517 192 5e-44 >seq2517 Length=16602 Score = 192 bits (212), Expect = 5e-44 Identities = 414/612 (68%), Gaps = 14/612 (2%) Strand=Plus/Minus Query 4515 GATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCG 4574 |||||| |||| || | || | || | || || || |||||| |||||||| || Sbjct 12086 GATGGTCTATTGACGATGTGTTTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCA 12027 Query 4575 TCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGC 4634 |||| |||||||| || ||| || || | |||||||| | ||| | ||| |||||| Sbjct 12026 TCTCGGCTAATCAACTCATTACTGAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGC 11967 Query 4635 CAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACT 4694 ||||| || | || ||||| ||||| ||||| | ||||| || || || || || || Sbjct 11966 CAAAAGATTGACGCGAATGAACCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACA 11907 Query 4695 AATCGGGACCCGAACGAGCTGGCTTTG-TCTTT--AATCCATTTTAATGCCCAGTTAGCT 4751 | || || | ||| |||| | ||| |||||| | | ||||| | || Sbjct 11906 ACACGCTCTGCGTA---GCTAGCTTCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCC 11850 Query 4752 TTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCAAAT 4808 || ||||| || || |||| || | || || || || | | | || ||| | Sbjct 11849 TTCTTCTTGACACAGGGAAGGGTTTCAATTGCATTGAAGAGGAAATCACGTTTGGCC--- 11793 Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || || ||||| |||||||| || || || ||||||||| || || || || || | Sbjct 11792 GGCTCCTGAATGTAAGTGTCGATGAGGAGAGAATACATTTCGGAGTGGATGTTCTCAACG 11733 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 ||||| || | || || || || | |||||| | ||||||||||| | || || || Sbjct 11732 GCAATTTGCATACCATAGAAACAACGAGCTTCGGGCACTTGAACTTCTTGGCAGAA-GTT 11674 Query 4929 TCTACTAAG-TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGA 4987 | | || ||||| || || ||||| || ||||| ||||| || || | ||| || || Sbjct 11673 CATGCAGAGATTTTCATTGACGATACCATCGCTGGCAGCAAAGAAGGCGAGAACGTGGGA 11614 Query 4988 TATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATC 5047 ||||||| | ||| | || ||| | | ||||| || | |||||| | ||||| Sbjct 11613 AATAAAGTGACGCTCGCCGTCATTCAGTCTCTCCCAGTCGGTGAGATCTTTGGCCAAATC 11554 Query 5048 AACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGG 5107 ||| |||||||| ||||| || || || | || || ||||| | ||| ||||| | Sbjct 11553 AACCTCTTCAACGGTCCAGAAGGAAGCGACAGCCTTCTTGTAGAATTCCCAGATATCGTG 11494 Query 5108 ATACTGAATCGG 5119 ||| ||||| || Sbjct 11493 ATATTGAATGGG 11482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426977203082030