Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq116 255 8e-63 seq2517 235 8e-57 >seq116 Length=136166 Score = 255 bits (282), Expect = 8e-63 Identities = 447/645 (69%), Gaps = 12/645 (2%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||| |||||| | || || ||| ||| ||||| | |||||| |||| ||| || Sbjct 11254 CTCTGCTTCATACTTGGTGTAGAGCGCTTCGAATTCCTTTCCCCAGCAATCAGCCAGACC 11195 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || ||||| | ||| ||| || | ||| | |||| | | ||| | | |||||| Sbjct 11194 CGGACATTCGTGAGGGTCCATAAAAGTCCAATTCTCATCGTTTTGAACCCTCTGCATAAA 11135 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 ||||| || ||||| ||||| | ||||||||||| || | | || ||| || || Sbjct 11134 AAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCTAGTACGAATCTCCTCAGCCCCGGT 11075 Query 78077 ATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGC 78136 ||| | || || | |||| || | ||||| |||||| ||||| || || ||||| Sbjct 11074 GTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCCAGGGTTCAAGGTAGATTGC 11015 Query 78137 CATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAAC 78196 | | | ||||| || ||||| || || ||||||| |||||| |||||| |||| | || Sbjct 11014 AAAAGCACCAGGACGCTTATTGCCACCTTGATCTACATATCTAGCGGTGCTATTGAACAC 10955 Query 78197 TCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACT 78256 || | ||| |||| | || || ||| ||||| |||||||||||| || | || || Sbjct 10954 TCGGAGCATAGGAACCAAGCCATTGGATTCACCATTGGTTCCAGAAATAAAAGTACC-CT 10896 Query 78257 TGC-GCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGA 78311 ||| ||||| |||| | || || || ||||| || |||| || |||| Sbjct 10895 TGCTACGAAT----GCAATGAACATTAAGACCAATGCCTCCAGCATTCTTTGAAATTAAG 10840 Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGA 78371 || || |||| | |||||||||||||||||| |||||||||||| |||| | | || Sbjct 10839 GCACACTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGATGAGG 10780 Query 78372 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGC 78431 |||||||| |||| |||| || ||||| | ||| || | || || || ||||| Sbjct 10779 AAACAGCTTGACAGTTGAGGAACTGGTGTTCCCGAATTGAAGAGAGTTGGGGAAGCATGA 10720 Query 78432 GTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTG 78490 || ||||| |||| ||| | |||| || || |||| || | ||| | || ||| | Sbjct 10719 GTGAACCACTTTTGAGACATCAGATGATACGTCTCAAAGGCAGCTTCGAGATCACCACCG 10660 Query 78491 ATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 ||||| || | | |||||||| ||||| || || ||||| || Sbjct 10659 -TGAATGCCCAGGGACACACGCATAAACATGTGTTGGGGTCTCTC 10616 >seq2517 Length=16602 Score = 235 bits (260), Expect = 8e-57 Identities = 446/649 (69%), Gaps = 12/649 (2%) Strand=Plus/Minus Query 48126 TGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCG 48185 ||||| || || || || || |||||| || | ||| ||||||| ||||| || || Sbjct 12068 TGTTTGAAGATCAAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCA 12009 Query 48186 TTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAA 48245 ||| || |||||||||||||| || ||||| || || |||||||| |||| |||||| Sbjct 12008 TTACTGAAAGTGAGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAAT 11949 Query 48246 GATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG 48305 || ||||| ||||| | ||||| || || || || ||| || | |||| |||| || Sbjct 11948 GAACCAGAGAAGAAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTA 11889 Query 48306 GCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATT 48362 ||||| | | | ||||||| | |||||||| ||||||||||| ||||| || | Sbjct 11888 GCTTCCCTATTTGCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGG 11829 Query 48363 GTTTCTATAGCATTAAAGAGAAAGtttttttCATTGC--TATCTTTAACGTAAGTATCTA 48420 ||||| || ||||| ||||| || | || | || || | || |||||| || | Sbjct 11828 GTTTCAATTGCATTGAAGAGGAAATCACGTT--TGGCCGGCTCCTGAATGTAAGTGTCGA 11771 Query 48421 TTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAAC 48480 | | ||| ||||||||||||||| || || |||| || || || | || || |||| Sbjct 11770 TGAGGAGAGAATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAAC 11711 Query 48481 ATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA-GC-CAAATTCTCATTTAC 48538 | | ||||| | | || || || || || ||||| || | ||| ||||| || Sbjct 11710 AACGAGCTTCGGGCACTTGAACTTCTTGGCAGAA--GTTCATGCAGAGATTTTCATTGAC 11653 Query 48539 TATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGA 48598 || ||||| || |||||||| || || | || || |||||| | ||| | Sbjct 11652 GATACCATCGCTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTCGCCGTC 11593 Query 48599 AGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 48658 | ||||| | | |||||| ||| |||||| | | ||| || |||||| | ||||| || Sbjct 11592 ATTCAGTCTCTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAA 11533 Query 48659 TGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAAC 48718 || || | || || || || | | ||| ||||| ||||| || || | ||||| Sbjct 11532 GGAAGCGACAGCCTTCTTGTAGAATTCCCAGATATCGTGATATTGAATGGGCATGATAAC 11473 Query 48719 AAATCTATTTGGATTTTTTGCAAGGATAGGTTCCAT-GACTAAATAAGA 48766 || || | ||||| | |||||| || || || | ||| ||||| Sbjct 11472 GAACCTCCTAGGATTCGGTTCAAGGAGGGGCTCAATAGCCTATTTAAGA 11424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694548014462400