Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq116 264 2e-65 >seq116 Length=136166 Score = 264 bits (292), Expect = 2e-65 Identities = 444/637 (70%), Gaps = 4/637 (1%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||| |||||| | || || | | ||| ||||| | |||||| |||| ||| ||| Sbjct 11254 CTCTGCTTCATACTTGGTGTAGAGCGCTTCGAATTCCTTTCCCCAGCAATCAGCCAGACC 11195 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 |||||||| | || ||| || | ||| | |||| | | ||||| | |||||| Sbjct 11194 CGGACATTCGTGAGGGTCCATAAAAGTCCAATTCTCATCGTTTTGAACCCTCTGCATAAA 11135 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 ||||| || ||||| ||||| | ||||||||||| || | | || ||| || || Sbjct 11134 AAGATCGGGAATCCAGAGAGCCAAAAATAGATCTCTAGTACGAATCTCCTCAGCCCCGGT 11075 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 ||| | || || | ||||| || | ||||| |||||| ||||| || || || || Sbjct 11074 GTTCCTACGCAGTTCCATGAACTGCAAGACATCAGGATGCCAGGGTTCAAGGTAGATTGC 11015 Query 76732 CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAAC 76791 | | |||| || || ||||| || || ||||||| |||||| || ||| |||| | || Sbjct 11014 AAAAGCACCAGGACGCTTATTGCCACCTTGATCTACATATCTAGCGGTGCTATTGAACAC 10955 Query 76792 TCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACA 76851 || | ||| |||| | ||| || ||| |||||| |||||||||||| || | || | Sbjct 10954 TCGGAGCATAGGAACCAAGCCATTGGATTCACCATTGGTTCCAGAAATAAAAGTACC-CT 10896 Query 76852 TGC-ACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 76910 ||| |||||| | || | || || || ||||| || | || || |||| |||| Sbjct 10895 TGCTACGAATGCAATGAACATTAAGACCAATGCCTCCAGCATTCTTTGAAATTAAGGCAC 10836 Query 76911 AGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAAC 76970 | |||| | ||| || ||||| ||||| ||||| |||||| |||| | | || |||| Sbjct 10835 ACTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGATGAGGAAAC 10776 Query 76971 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGA 77030 |||| |||| |||| || ||||| | ||| || | || || || |||||||||| Sbjct 10775 AGCTTGACAGTTGAGGAACTGGTGTTCCCGAATTGAAGAGAGTTGGGGAAGCATGAGTGA 10716 Query 77031 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CCATTGATGA 77089 |||| |||| ||| | |||| || || |||| | ||||| | ||| ||| | ||| Sbjct 10715 ACCACTTTTGAGACATCAGATGATACGTCTCAAAGGCAGCTTCGAGATCACCACCG-TGA 10657 Query 77090 ATTCCTACAGCGACACGCATCAACATATGCTGAGGTC 77126 || || | | |||||||| ||||| || || |||| Sbjct 10656 ATGCCCAGGGACACACGCATAAACATGTGTTGGGGTC 10620 Score = 98.7 bits (108), Expect = 1e-15 Identities = 318/493 (65%), Gaps = 3/493 (1%) Strand=Plus/Minus Query 75365 TTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATA 75424 || ||||| | ||||||||||| || || ||| || || || || || |||||| Sbjct 12598 TTGTTATCAATAGTGAACTGAATTGGGTCGGCTGCAGGACGGGTTCGAAGGTAATACATA 12539 Query 75425 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTC 75484 || ||||| || ||| |||| |||||||||||||| || | || ||| | Sbjct 12538 CCCGTTTTCAGCCCCTTCTTCCACGCGTAGAAATGCATGGAAGTAATCTTTCCATAGTTG 12479 Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544 || || ||| || | ||| | |||||||| || || ||||| | | | ||| || Sbjct 12478 GGCTCTTTTATGTGGAGATTTAGTGACTGACTCTGGTCAATGAACGGAGCACGATCTGCG 12419 Query 75545 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 75604 || | | ||||| || || || || |||||||| | ||| || ||| || ||| Sbjct 12418 GCAAGATCAATAATCGTTTTCTGCGGGATTTCCCAGACAGTCTTATAAAGGGCCTTTATA 12359 Query 75605 TCATCTGGAA---GATTTGTATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTG 75661 |||||||||| | | | | |||||| || || || | || |||| ||| Sbjct 12358 TCATCTGGAATACCACCTATGTGTTGAATAGAACCCTGATTGGCAATGATTGCCAATTTG 12299 Query 75662 ATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATT 75721 | | || ||| | || | | |||| | | ||| ||| |||| Sbjct 12298 AGGGCCTCGGACCAAATGCCAAGATCAATGAGGTCTCTCAACATGTGATTATTGACAACC 12239 Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || || |||||||| | || | || | | | |||||||||| ||||| ||| Sbjct 12238 TGGAAATCTCCAGAGAGAACGCGACGTGAAAACACATTACTGGTAATGGGTTCAGTTGAT 12179 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || |||| || | ||||||||||||||| ||||| ||||| ||||||| | | || Sbjct 12178 TCGGTGTTACCGAGAATTTGAGCAGTTGATGCAGTGGGCATTGGTGCCAAAAGAAGGCTG 12119 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 12118 TTTCTAATACCAT 12106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712810438531200