Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1681 105 2e-17 seq109 96.9 8e-15 >seq1681 Length=28542 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || ||||| || |||||||| ||||| || | ||||| | ||||| |||| Sbjct 24822 CAAG-TGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGACAAAGTGCGGCCATCCTCTA 24880 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || |||||||| | |||||| || | | ||||||||||| || || | Sbjct 24881 ATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGA 24940 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | || | ||| |||||||| ||||| ||||| | Sbjct 24941 TCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGACTTCAAGTGTAATGGTTTTTC 25000 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || |||||||| || || | |||||| Sbjct 25001 CGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAG 151973 ||||| ||||||||||| |||| | || | |||||||| || || || || ||| Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 151974 ATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTC 152033 ||||| | || ||||| | | || || ||||| |||||||| || || ||| || Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 152034 TCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACG 152093 || | | | || ||| ||||| ||||| |||||||| || || ||||||||||| Sbjct 28422 TCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCACA 28363 Query 152094 AAGACCTGCATT 152105 || | |||||| Sbjct 28362 AAAATTTGCATT 28351 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||||||||| ||||| || || ||||| || | | || | || ||| Sbjct 24260 AGCACAAGATGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGAAAGTGTACGACCGTCT 24319 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || || | |||||| || | | |||||||| || || Sbjct 24320 TCCAGTTGCTTACCAGCGAATATGAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCC 24379 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | |||| ||| ||| || || | ||| || Sbjct 24380 TGGATCTTCGCCTTCACATTCTCAATCGTGTC---ACTCGGCTCCACCTCCAAAGTTATC 24436 Query 152070 GTTTTGCCCGTGAGAGTCTTCAC 152092 |||||||||||||| || ||||| Sbjct 24437 GTTTTGCCCGTGAGTGTTTTCAC 24459 >seq109 Length=140612 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || || |||||||||||||| | | ||| | |||||||| | Sbjct 74654 CAAG-TGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCATCTTCCA 74712 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| |||||||| || | | ||||| || | | || || ||||| ||| ||| Sbjct 74713 ATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGGAATACCCTCCTTATCTCGAA 74772 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| |||| | |||| ||| ||||||||||| |||||||||| Sbjct 74773 TTTTAGCCTTCACATTCTCAATATAATCTGCGGGCTCAACTTCAAGAGTGATAGTTTTGC 74832 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | || || || || | |||||| Sbjct 74833 CAGTTAAGGTTTTGACAAAAATCTGCAT 74860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153615163893610