Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1681 150 4e-31 seq109 123 5e-23 >seq1681 Length=28542 Score = 150 bits (166), Expect = 4e-31 Identities = 151/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| |||||||||||||| | || || || ||||| || ||||| || || |||||| Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | |||||||||||| ||||| |||||||||||||| ||||| || ||||| | Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTAGCCTTTACATTC 28423 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || || | || |||||||||||||| || ||||| || | |||||| || Sbjct 28422 TCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCACA 28363 Query 283089 AATATCTGCATTTTCA 283104 || || |||||| ||| Sbjct 28362 AAAATTTGCATTATCA 28347 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || | |||| || | || ||| |||||||| |||||||| | Sbjct 24802 CCACCACGGAGACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGAC 24861 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||||||||||||| |||||| || |||||||| | ||| || || || ||| Sbjct 24862 AAAGTGCGGCCATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGGA 24921 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || || | ||||| || || || |||||| Sbjct 24922 ATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGACT 24981 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || || || || || | |||||| || || |||||||| Sbjct 24982 TCAAGTGTAATGGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 >seq109 Length=140612 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || | || ||| || ||||||||||| || | Sbjct 74633 ACCACCACGAAGACGCAACACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGA 74692 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || | |||||| ||||| || ||||||||||| || || || Sbjct 74693 GAGAGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGG 74752 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||| ||| | || || || || || | || ||| || | | || || Sbjct 74753 AATACCCTCCTTATCTCGAATTTTAGCCTTCACATTCTCAATATAATCTGCGGGCTCAAC 74812 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| |||||||| || || || || || || || || || |||||||| Sbjct 74813 TTCAAGAGTGATAGTTTTGCCAGTTAAGGTTTTGACAAAAATCTGCAT 74860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046552648177140