Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2517 138 1e-27 >seq2517 Length=16602 Score = 138 bits (152), Expect = 1e-27 Identities = 393/597 (66%), Gaps = 14/597 (2%) Strand=Plus/Minus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 || || || |||||| || | || ||||| | |||||||| |||||| || || Sbjct 12056 AAGCAGGCGAAATCAGTGTGCAAACCCTCATCTCGGCTAATCAACTCATTACTGAAAGTG 11997 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625 | || ||||| | || || || |||| |||||| |||| || ||||| || || ||| Sbjct 11996 AGACCGGGCATGAGACCACGCTTCTTAAGCCAAAAGATTGACGCGAATGAACCAGAGAAG 11937 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 || | ||| |||||||| || ||||| |||| ||| | | | || | || Sbjct 11936 AAGACACCTTCAACAGCAGCGAAGGCGACAACACGCTCTGCGTAGCTAGCTTCCCTATTT 11877 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 | |||||| | | ||||| |||||| || ||||| || ||||||||||| Sbjct 11876 GCAATCCACCTCAGAGCCCAATCGGCCTTCTTCTTGACACAGGGAAGGGTTTCAATTGCA 11817 Query 23746 TTTAAGAGAAAA----GTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACT 23801 || ||||| ||| |||| | | ||| || || || || || || | | Sbjct 11816 TTGAAGAGGAAATCACGTTTGGCCGGCTC---CTGA-ATGTAAGTGTCGATGAGGAGAGA 11761 Query 23802 ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||||||||| || || || || |||| ||||| || | ||||| ||||| | |||||| Sbjct 11760 ATACATTTCGGAGTGGATGTTCTCAACGGCAATTTGCATACCATAGAAACAACGAGCTTC 11701 Query 23862 AGACAATTGAACATCATTAAAAAA--TCTTTTAGCTAAATTTTCGTTAACAATACCATCA 23919 | || |||||| || | | || || | || | |||||| || || |||||||| Sbjct 11700 GGGCACTTGAACTTCTTGGCAGAAGTTCATGCAG--AGATTTTCATTGACGATACCATCG 11643 Query 23920 CTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT-AATTT 23978 || ||||||||||| || ||||| | ||||| || | || | || | | | | Sbjct 11642 CTGGCAGCAAAGAAGGCGAGAACGTGGGAAATAAAGTGACGCTC-GCCGTCATTCAGTCT 11584 Query 23979 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAA 24038 | ||| || | | |||||| | |||||||| || ||||| ||||| || || | Sbjct 11583 CTCCCAGTCGGTGAGATCTTTGGCCAAATCAACCTCTTCAACGGTCCAGAAGGAAGCGAC 11524 Query 24039 GGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCT 24095 || ||| || | | ||| ||||| | || ||| || || | || ||||| || Sbjct 11523 AGCCTTCTTGTAGAATTCCCAGATATCGTGATATTGAATGGGCATGATAACGAACCT 11467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521397326274000