Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1681 93.3 3e-14 seq109 91.5 1e-13 >seq1681 Length=28542 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | |||||||| ||| || || ||||||||||| ||||| Sbjct 24795 TTGCATGCCACCACGGAGACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTA 24854 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | ||| | || || | || || || |||||||| | |||||||||||| Sbjct 24855 GTCCGACAAAGTGCGGCCATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATC 24914 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || ||| | |||||||| ||| |||||| || | || ||| | || || ||| | Sbjct 24915 TGGAGGAATTCCTTCCTTGTCCTGGATCTTC-GCCTTAACATTCTCGATTGTATCGCTAG 24973 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| || ||||| || || ||||| || || || ||||| Sbjct 24974 GCTCGACTTCAAGTGTAATGGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || ||||| || || || || || ||||| || | ||| || |||| || Sbjct 24262 CACAAGATGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGAAAGTGTACGACCGTCTTC 24321 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||| ||||| || || || || | |||||||||||||| || | ||||| || ||| Sbjct 24322 CAGTTGCTTACCAGCGAATATGAGACGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTG 24381 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||||| | | || ||||| | |||||||||| || ||||| || Sbjct 24382 GATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCCACCTCCAAAGTTATCGTTTT 24441 Query 44308 TCCCGTGAGGGTCTTCAC 44325 |||||||| || ||||| Sbjct 24442 GCCCGTGAGTGTTTTCAC 24459 >seq109 Length=140612 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 |||||||| |||||| || ||||| |||||||||||||| | ||| || | || Sbjct 74648 CAACACCAAGTGAAGTGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTACGGCCATC 74707 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||| || || ||||| || |||||||| |||||||||||||| | ||| ||||| || Sbjct 74708 TTCCAATTGTTTGCCGGCGAAAATCAAACGTTGCTGATCTGAAGGAATACCCTCCTTATC 74767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359929371502470