Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1681 123 6e-23 seq13481 91.5 4e-13 >seq1681 Length=28542 Score = 123 bits (136), Expect = 6e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCG 177990 |||||||| ||||| || |||||||| || | |||||||| || || |||| || | Sbjct 24459 GTGAAAACACTCACGGGCAAAACGATAACTTTGGAGGTGGA--GCCGAGTGACACGATTG 24402 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 |||| || || ||||| ||||||||||||||||| || || || ||||| || || | Sbjct 24401 AGAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCACCAGATCAGCAGCGTCTCA 24342 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | ||||| || || || || ||||| || | || ||| | || || || | || |||| Sbjct 24341 TATTCGCTGGTAAGCAACTGGAAGACGGTCGTACACTTTCGGACTACAATATTCAGAAAG 24282 Query 178111 AATCAACACTGCATCTTGT 178129 |||| || || |||||||| Sbjct 24281 AATCTACTCTTCATCTTGT 24263 >seq13481 Length=537 Score = 91.5 bits (100), Expect = 4e-13 Identities = 101/133 (76%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| || || ||||| || |||||||| || || || || || || || || Sbjct 407 CAGATTTTTGTAAAGACTCTTACTGGAAAAACCATTACACTTGAAGTCGA--GCCTAGTG 464 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| ||||||||||||||||| ||||| || |||| Sbjct 465 ATACAATTGAGAATGTGAAAGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAGC 524 Query 178042 AACGACTTATCTT 178054 | ||||| ||||| Sbjct 525 AGCGACTAATCTT 537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203516668768540