Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1681 109 5e-19 seq2406 96.9 3e-15 >seq1681 Length=28542 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | ||| ||||| || || || |||||||| || ||||| || Sbjct 24245 CCGCCACGAAGGCGAAGCACAAGATGAAGAGTAGATTCTTTCTGAATATTGTAGTCCGAA 24304 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || || ||||| || |||||||| || ||||| || || | ||| Sbjct 24305 AGTGTACGACCGTCTTCCAGTTGCTTACCAGCGAATATGAGACGCTGCTGATCTGGTGGA 24364 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | || |||||| ||| || ||||| | | ||||| |||| ||||||| Sbjct 24365 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCCACC 24424 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 |||| ||||||||||| ||||| || || || || Sbjct 24425 TCCAAAGTTATCGTTTTGCCCGTGAGTGTTTTCAC 24459 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || ||||| ||||| |||||||||||||| || | || || || |||||||| || || Sbjct 28542 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGACCATCTTCCAGTTGCTTGCCAGCAAAG 28483 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGA 41790 || || || |||||||| | ||||| || |||||||| | ||| | || | ||| | Sbjct 28482 ATAAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTGT-CTTGAATCTTAGCCTTTACATT 28424 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | || ||||| | ||| || || | || || |||||||| || || ||||| || Sbjct 28423 CTCAATGGTATCGCTTGGCTCAACTTCGAGAGTGATAGTTTTACCAGTAAGAGTCTTCAC 28364 Query 41851 GAAAATCTGCAT 41862 ||||| ||||| Sbjct 28363 AAAAATTTGCAT 28352 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||||| || || || ||||| || || || ||||| || Sbjct 24801 GCCACCACGGAGACGCAACACCAAGTGGAGGGTAGATTCCTTTTGGATATTGTAGTCCGA 24860 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || || | || ||||| || || || || ||||| || || | || Sbjct 24861 CAAAGTGCGGCCATCCTCTAATTGTTTGCCTGCAAAGATAAGACGCTGCTGATCTGGAGG 24920 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || | ||||||||| ||| || ||| | | | || ||||| | ||| || Sbjct 24921 AATTCCTTCCTTGTCCTGGATCTTCGCCTTAACATTCTCGATTGTATCGCTAGGCTCGAC 24980 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || || || |||||||| ||||||||||| Sbjct 24981 TTCAAGTGTAATGGTTTTTCCGGTAAGAGTCTTTACAAAAATCTGCAT 25028 >seq2406 Length=17766 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| |||||| |||||||||||||| || Sbjct 17636 CCACCACGAAGACGAAGTACAAGATGTAGGGTGGACTCCTTTTGAATGTTATAGTCAGAA 17695 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || || |||||||| || || || || ||||||||||| | |||| Sbjct 17696 AGAGTACGACCATCTTCCAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGA 17755 Query 41756 ACGCTCTCCTT 41766 | || |||||| Sbjct 17756 ATGCCCTCCTT 17766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462223616892000