Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq779 159 4e-34 >seq779 Length=16055361 Score = 159 bits (176), Expect = 4e-34 Identities = 490/745 (66%), Gaps = 16/745 (2%) Strand=Plus/Minus Query 16799 TCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACC 16858 || || |||||| || ||||||||||| || |||||||| ||||| | | || Sbjct 8446925 TCAGCGACAAATCTAATGTATTGGCACATCAAACGACAGTTCATGCCTATCAAATCAACG 8446866 Query 16859 GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCA 16918 ||||||||||| || | ||| ||| || |||| || || || || || | | Sbjct 8446865 GGAAGAGCTTCAGTGAGGAATTCGCACTCAATCTCAACTGCATCACGCATGAT-CTCGTA 8446807 Query 16919 -ACTCGTTCCTCGGACGGTGTATGTTTAAGATGT--TTAAACATCAGACATGCGAAATCG 16975 || || | | ||||| | ||| | | || || || |||| || |||||||| Sbjct 8446806 GACACGCTTAGCCGACGGCTT--GTTCACTACGTGCTTGAAGATCAAGCACGCGAAATCA 8446749 Query 16976 CAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTT 17035 ||| | ||||| || | ||| || | || ||| || || | || ||||| Sbjct 8446748 GTATGCAGACCCTCATCGCGGCTAATCAACTCATTACTGAAAGTGAGACCAGGCATTAAA 8446689 Query 17036 CCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACG 17095 || || ||||| | ||| || || | |||||| || || || ||||||| |||||| || Sbjct 8446688 CCACGCTTCTTCAGCCAGAAGATTGAGGCGAATGAACCCGAGAAGAATACACCCTCTACA 8446629 Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGC 17155 | ||||||||| | | || || || |||| |||||||||||| | ||||| || | Sbjct 8446628 GCTGCAAACGCCACAACACGCTCCGCATACGACGCGTCTTTGTTCCCGATCCACCTCAGG 8446569 Query 17156 ACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA--ATTTCT 17213 |||| || || || | ||| | || || || || || || || || | | || Sbjct 8446568 GCCCAATCCGCCTTCTTCTTCACACACGGCAAAGTCTCAATCGCATTGAAGAGGAAGTCA 8446509 Query 17214 CTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTA 17273 | || | | | || | | ||| ||||| ||||| || |||||| || ||||| | Sbjct 8446508 CGCTTGGCAG--GCTCTTTCACATAAGTATCAATGAGGAGTGAGTACATCTCCGAGTGGA 8446451 Query 17274 TGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCA 17333 | ||||| | ||| || || | || || || || || ||||| | |||||||| || Sbjct 8446450 TATTCTCAACGGCAATTTGCATCCCATAGAAACAACGAGCTTCAGGGATTTGAACCTCTT 8446391 Query 17334 CGTAGAATCGTTC-CGC-TAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 | |||| |||| || ||||| ||||||||||| ||||| || || ||||| || || Sbjct 8446390 GGCAGAA--GTTCATGCAGAGATTCTCGTTCACGATACCGTCACTGGCAGCGAAGAAAGC 8446333 Query 17392 CAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAGAACGCGCCAGTCCTTTAAAT 17450 || | || || |||| || ||| | | || | |||||| | | || Sbjct 8446332 CAGAACGTGGGAGATAAAATGACGCTC-CCCGTCGTTCAGTCCCTCCCAGTCAGTGAGAT 8446274 Query 17451 CTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATAT 17510 |||| | | || || || || |||||| || |||||| ||||| || || | | Sbjct 8446273 CTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAGGAAGCCACAGCCTTCTTGTAGAACT 8446214 Query 17511 TCCAAATATCATTGTATTGTATGGG 17535 ||| ||||| | |||||| ||||| Sbjct 8446213 CCCAGATATCGTGGTATTGAATGGG 8446189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517522032267240