Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq779 149 6e-31 >seq779 Length=16055361 Score = 149 bits (164), Expect = 6e-31 Identities = 397/600 (66%), Gaps = 10/600 (2%) Strand=Plus/Minus Query 16037 TCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCGTAC 16095 || || |||||| || ||||| ||||| || || || || ||||| || || || Sbjct 8446925 TCAGCGACAAATCTAATGTATTGGCACATCAAACGACAGTTCATGCCTATCAAATCA-AC 8446867 Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155 |||||||||| || | |||| || ||| |||| || || ||||| ||| Sbjct 8446866 GGGAAGAGCTTCAGTGAGGAATTCGCACTCAATCTCAACTGCATCACGCATGATCTCGTA 8446807 Query 16156 GGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCA 16215 | | || | | ||||| | | || ||| || || || | |||||||| || Sbjct 8446806 GACACGCTTAGCCGACGGCTTGTTCACTACGTGCTTGAAGATCAAGCACGCGAAATCAGT 8446747 Query 16216 ATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCC 16275 ||| || || || || | ||| || | || || ||||| | || |||||| || Sbjct 8446746 ATGCAGACCCTCATCGCGGCTAATCAACTCATTACTGAAAGTGAGACCAGGCATTAAACC 8446687 Query 16276 TCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGA 16335 || ||||| | |||||| || | || ||||| ||||| ||||||| |||||| |||| Sbjct 8446686 ACGCTTCTTCAGCCAGAAGATTGAGGCGAATGAACCCGAGAAGAATACACCCTCTACAGC 8446627 Query 16336 TGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTAC 16395 |||||| || | | || ||||| |||| || ||||| || | ||||| || | | Sbjct 8446626 TGCAAACGCCACAACACGCTCCGCATACGACGCGTCTTTGTTCCCGATCCACCTCAGGGC 8446567 Query 16396 CCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA--ATTTCTCT 16453 ||| || || || | || | ||| || || || || || || || | | || | Sbjct 8446566 CCAATCCGCCTTCTTCTTCACACACGGCAAAGTCTCAATCGCATTGAAGAGGAAGTCACG 8446507 Query 16454 TTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATG 16513 || | | | | | | ||| |||||||| || | |||||| || ||||| || Sbjct 8446506 CTTGGCAGGCTCTT--TCACATAAGTATCAATGAGGAGTGAGTACATCTCCGAGTGGATA 8446449 Query 16514 TTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACG 16573 ||||| | ||| || || | |||||||| || ||||| || | ||||| || || | Sbjct 8446448 TTCTCAACGGCAATTTGCATCCCATAGAAACAACGAGCTTCAGGGATTTGAACCTCTTGG 8446389 Query 16574 TAAAATCGTTCCGCCAGG--TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA 16631 | || |||| ||| ||||| ||||||||||||||||| ||||| || || |||| Sbjct 8446388 CAGAA--GTTCATGCAGAGATTCTCGTTCACGATACCGTCACTGGCAGCGAAGAAAGCCA 8446331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511391111466760