Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3534 237 2e-57 seq1079 237 2e-57 seq779 226 3e-54 seq2512 221 1e-52 >seq3534 Length=36356 Score = 237 bits (262), Expect = 2e-57 Identities = 422/613 (69%), Gaps = 2/613 (0%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||| ||||| |||||||| | ||| ||||| ||||| | ||| ||| || | Sbjct 23100 TTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGGCATTCGTGAGGATCCATGAAAGT 23159 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||||| | ||||| | || | | ||| || |||||||||||||| ||||| | ||| Sbjct 23160 CCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAA 23219 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 |||||||| | | | ||||| ||| || || | || || | |||| || Sbjct 23220 GAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTCTGCGCAGCTCCATGAACTGCAA 23279 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 | ||||| ||||| ||||| | ||||| | | | | || || || || || || || Sbjct 23280 GACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACC 23339 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 |||||| | || ||||||||| |||| || |||| | ||| |||| | |||||||| Sbjct 23340 CTGATCCACATACCTAGCGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGA 23399 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 | |||||||||| |||| |||| | | || || ||||||| | || || || Sbjct 23400 TTCACCATTGGTTCCGGCGATAAAAGTACCCTTGCTACGAATACAATGAACATTAAGGCC 23459 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 54369 | ||||| || | || ||||| || || ||| |||| | ||||| ||||| ||||| Sbjct 23460 AACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTC 23519 Query 54370 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 54429 ||||| |||||| |||| | ||||| |||||||| |||||||| || || || Sbjct 23520 AATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCC 23579 Query 54430 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 54489 || ||| || | || || || || || || ||||| || | ||| | ||||| |||||| Sbjct 23580 CGAATTGAAGAGAGTCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGT 23639 Query 54490 CTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 54548 ||| | || | || | ||| || | || || || | | |||||||| ||||||| Sbjct 23640 CTCAAAGGCAGCTTCGAGATCATCACCG-TGGATACCCAAGGACACACGCATAAACATGT 23698 Query 54549 GCTGAGGTCTTTC 54561 |||| ||||| || Sbjct 23699 GCTGGGGTCTCTC 23711 Score = 116 bits (128), Expect = 4e-21 Identities = 313/473 (66%), Gaps = 17/473 (4%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 21708 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 21767 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 || || || || ||||| |||| |||||||| || | || ||| | || Sbjct 21768 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 21827 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || ||| |||| ||||| |||||||| ||||| ||||| | | | |||||||| Sbjct 21828 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 21887 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 53038 | | || ||||| || |||||||| ||||| | ||| |||| | ||| ||||| Sbjct 21888 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 21947 Query 53039 TCTGGAA---GGTTTGTATTCTGAATAGATCCACCATCTACCATAAT--CCTATTCTTGA 53093 ||||||| || | | |||||||| || | | ||||| || || |||| Sbjct 21948 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 22005 Query 53094 TCTCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--ATTAAC 53148 | ||| ||| | | | | ||| | | |||| | | ||| || ||| || Sbjct 22006 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 22060 Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 | || || |||||||| | || | || | ||| |||||| ||| ||||| Sbjct 22061 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 22120 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 53261 |||||| | ||||| | |||||||||||||||||||| ||||| |||||| Sbjct 22121 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 22173 >seq1079 Length=19334 Score = 237 bits (262), Expect = 2e-57 Identities = 422/613 (69%), Gaps = 2/613 (0%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||| ||||| |||||||| | ||| ||||| ||||| | ||| ||| || | Sbjct 5777 TTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGGCATTCGTGAGGATCCATGAAAGT 5718 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||||| | ||||| | || | | ||| || |||||||||||||| ||||| | ||| Sbjct 5717 CCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAA 5658 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 |||||||| | | | ||||| ||| || || | || || | |||| || Sbjct 5657 GAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTCTGCGCAGCTCCATGAACTGCAA 5598 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 | ||||| ||||| ||||| | ||||| | | | | || || || || || || || Sbjct 5597 GACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACC 5538 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 |||||| | || ||||||||| |||| || |||| | ||| |||| | |||||||| Sbjct 5537 CTGATCCACATACCTAGCGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGA 5478 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 | |||||||||| |||| |||| | | || || ||||||| | || || || Sbjct 5477 TTCACCATTGGTTCCGGCGATAAAAGTACCCTTGCTACGAATACAATGAACATTAAGGCC 5418 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 54369 | ||||| || | || ||||| || || ||| |||| | ||||| ||||| ||||| Sbjct 5417 AACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTC 5358 Query 54370 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 54429 ||||| |||||| |||| | ||||| |||||||| |||||||| || || || Sbjct 5357 AATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCC 5298 Query 54430 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 54489 || ||| || | || || || || || || ||||| || | ||| | ||||| |||||| Sbjct 5297 CGAATTGAAGAGAGTCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGT 5238 Query 54490 CTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 54548 ||| | || | || | ||| || | || || || | | |||||||| ||||||| Sbjct 5237 CTCAAAGGCAGCTTCGAGATCATCACCG-TGGATACCCAAGGACACACGCATAAACATGT 5179 Query 54549 GCTGAGGTCTTTC 54561 |||| ||||| || Sbjct 5178 GCTGGGGTCTCTC 5166 Score = 116 bits (128), Expect = 4e-21 Identities = 313/473 (66%), Gaps = 17/473 (4%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 7169 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 7110 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 || || || || ||||| |||| |||||||| || | || ||| | || Sbjct 7109 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 7050 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || ||| |||| ||||| |||||||| ||||| ||||| | | | |||||||| Sbjct 7049 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 6990 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 53038 | | || ||||| || |||||||| ||||| | ||| |||| | ||| ||||| Sbjct 6989 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 6930 Query 53039 TCTGGAA---GGTTTGTATTCTGAATAGATCCACCATCTACCATAAT--CCTATTCTTGA 53093 ||||||| || | | |||||||| || | | ||||| || || |||| Sbjct 6929 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 6872 Query 53094 TCTCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--ATTAAC 53148 | ||| ||| | | | | ||| | | |||| | | ||| || ||| || Sbjct 6871 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 6817 Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 | || || |||||||| | || | || | ||| |||||| ||| ||||| Sbjct 6816 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 6757 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 53261 |||||| | ||||| | |||||||||||||||||||| ||||| |||||| Sbjct 6756 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 6704 >seq779 Length=16055361 Score = 226 bits (250), Expect = 3e-54 Identities = 445/648 (69%), Gaps = 15/648 (2%) Strand=Plus/Minus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || || || ||||| || |||||||| || |||||||| || | ||||| || || Sbjct 8446775 TGCTTGAAGATCAAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCA 8446716 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 || || ||||| || ||||||| |||||||| || ||||| || || || || ||| Sbjct 8446715 TTACTGAAAGTGAGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAAT 8446656 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG 24299 || || || ||||| | || ||||| || ||||| || | || | || |||| || Sbjct 8446655 GAACCCGAGAAGAATACACCCTCTACAGCTGCAAACGCCACAACACGCTCCGCATA--CG 8446598 Query 24300 GCGCTGTCAT-GT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 24353 ||| ||| | || |||||| | | |||||||| |||||||| || ||||| ||| Sbjct 8446597 ACGC-GTCTTTGTTCCCGATCCACCTCAGGGCCCAATCCGCCTTCTTCTTCACACACGGC 8446539 Query 24354 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 24413 | ||||| || ||||| ||||| ||| | | ||||| ||||| |||||| Sbjct 8446538 AAAGTCTCAATCGCATTGAAGAGGAAGTCACGCTTGGCAGGCTCTTTCACATAAGTATCA 8446479 Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 || | || ||||| ||||| || || || |||| ||| ||||| | || |||||| Sbjct 8446478 ATGAGGAGTGAGTACATCTCCGAGTGGATATTCTCAACGGCAATTTGCATCCCATAGAAA 8446419 Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC-TGCTAA-ATTTTCATTCA 24531 || | ||| || | || || || ||| || || |||| ||| | ||| || |||| Sbjct 8446418 CAACGAGCTTCAGGGATTTGAACCTCTTGGCAGAA--GTTCATGCAGAGATTCTCGTTCA 8446361 Query 24532 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCT 24590 | || ||||||||||| || || || |||| || || ||||||| | | | | Sbjct 8446360 CGATACCGTCACTGGCAGCGAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCCCCGT 8446301 Query 24591 GGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 24650 || | ||| | ||| ||| ||| |||||| | | || || || ||||| ||||| Sbjct 8446300 CGT-TCAGTCCCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAG 8446242 Query 24651 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 || || ||| | ||||| || || | | |||||| || || |||||||| || | || Sbjct 8446241 AAGGAAGCCACAGCCTTCTTGTAGAACTCCCAGATATCGTGGTATTGAATGGGCATGATT 8446182 Query 24711 ACAAATCTATTTGGATTTTTTGCAAGGATTGGTTCCATAACTAAATTA 24758 ||||| ||| ||||| ||||||| ||||| ||| | ||||| Sbjct 8446181 ACAAACCTACCGGGATTGGGCTCAAGGATGGGTTCGATAGCCTAATTA 8446134 >seq2512 Length=2172 Score = 221 bits (244), Expect = 1e-52 Identities = 366/526 (70%), Gaps = 2/526 (0%) Strand=Plus/Plus Query 54037 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 54096 ||| || |||||||||||||| ||||| | ||| |||||||| | | | ||||| Sbjct 5 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 64 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 ||| || || | || || | |||| || | ||||| ||||| ||||| | || Sbjct 65 TCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATA 124 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 ||| | | | | || || || || || || |||||||| | || ||||||||| |||| Sbjct 125 TATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATT 184 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 54276 || |||| | ||| |||| | ||||||||| |||||||||| |||| |||| | | Sbjct 185 GTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 244 Query 54277 TCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAA 54336 || || ||||||| | || || || | ||||| || | || ||||| || Sbjct 245 ACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAA 304 Query 54337 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 54396 || ||| |||| | ||||| ||||| ||||| ||||| |||||| |||| | ||||| Sbjct 305 AGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAG 364 Query 54397 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 54456 |||||||| |||||||| || || |||| ||| || | || || || || || Sbjct 365 GAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATG 424 Query 54457 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATT 54515 || ||||| || | ||| | ||||| ||||||||| | || | || | ||| || Sbjct 425 GGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACC 484 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 54561 | || || || | | |||||||| ||||||||||| ||||| || Sbjct 485 G-TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593694563402640