Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1091 96.9 3e-15 >seq1091 Length=18644 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||| || |||||||| ||||| ||||| | || || | | || Sbjct 1705 AGCACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCT 1646 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || || ||||| ||| | ||||| | ||| ||||| ||| | |||||||||||| Sbjct 1645 TCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 1586 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||||| | | | ||||| | |||||| ||| | ||||||||| Sbjct 1585 TGAATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACTTCAAGTGTAATGGTC 1526 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || || | || || ||||| || |||||| Sbjct 1525 TTTCCTGTGAGAGTCTTAACAAAGATCTGCATT 1493 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| ||||| | ||||| | | || || || || ||||| Sbjct 1462 GTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATCTTCAAGTTGCTTGCCA 1403 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | ||||| | || ||||| ||| | |||||||||||| ||||| || Sbjct 1402 GCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTT 1343 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| ||||| | |||||| ||| | ||||| || || ||||| | || Sbjct 1342 ACATTCTCGATGGTATCGCTGGGCTCAACTTCGAGAGTAATAGTTTTACCGGTGAGAGTC 1283 Query 21159 TTGACAAATATTTGCATT 21176 || ||||| || |||||| Sbjct 1282 TTCACAAAAATCTGCATT 1265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422240452087388