Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq779 246 3e-60 seq1091 111 2e-19 seq3456 98.7 1e-15 seq778 87.8 2e-12 >seq779 Length=16055361 Score = 246 bits (272), Expect = 3e-60 Identities = 419/605 (69%), Gaps = 8/605 (1%) Strand=Plus/Plus Query 116604 GGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGG 116663 |||| || || | ||||| ||||||| || || ||| | ||||| ||||| | || Sbjct 8446175 GGTTTGTAATCATGCCCATTCAATACCACGATATCTGGGAGTTCTACAAGAAGGCTGTGG 8446234 Query 116664 CGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCT 116723 | || ||||||||||| |||||||| ||| || | || || | ||||||||| | Sbjct 8446235 CTTCCTTCTGGACCGTGGAGGAGGTTGACTTGACGAAAGATCTCACTGACTGGGAGGGAC 8446294 Query 116724 TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACG 116783 |||||||| ||||| ||||| ||| ||||| ||||| || ||||| ||||| |||| Sbjct 8446295 TGAACGACGGGGAGCGTCATTTTATCTCCCACGTTCTGGCTTTCTTCGCTGCCAGTGACG 8446354 Query 116784 GCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGC 116843 | ||||| ||||||||||| | | ||| || ||||| || | | || || | Sbjct 8446355 GTATCGTGAACGAGAATCTCTGCATGAACTTCTGCCAAGAGGTTCAAATCCCTGAAGCTC 8446414 Query 116844 GGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCC 116903 | || ||||| || | || || ||| | ||||| | |||||||| ||||| || || Sbjct 8446415 GTTGTTTCTATGGGATGCAAATTGCCGTTGAGAATATCCACTCGGAGATGTACTCACTCC 8446474 Query 116904 TCATCGACACGTACGT----GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATC 116959 |||| || || || || | || || | || | ||| | || || || || Sbjct 8446475 TCATTGATACTTATGTGAAAGAGC-CTGCCAAGCGTGACTTCC---TCTTCAATGCGATT 8446530 Query 116960 GAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGA 117019 ||||| ||||||| || || ||||||| || ||||| ||| | ||||||| || | Sbjct 8446531 GAGACTTTGCCGTGTGTGAAGAAGAAGGCGGATTGGGCCCTGAGGTGGATCGGGAACAAA 8446590 Query 117020 GAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCG 117079 || || | | | ||||| | ||||| || || || || ||||| || ||||| ||| Sbjct 8446591 GACGCGTCGTATGCGGAGCGTGTTGTGGCGTTTGCAGCTGTAGAGGGTGTATTCTTCTCG 8446650 Query 117080 GGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 || |||||| | || || ||||| ||||| || || | ||||| || || |||||| Sbjct 8446651 GGTTCATTCGCCTCAATCTTCTGGCTGAAGAAGCGTGGTTTAATGCCTGGTCTCACTTTC 8446710 Query 117140 AGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 || || ||| | || | | || |||||||||||| || || || || ||| | ||| Sbjct 8446711 AGTAATGAGTTGATTAGCCGCGATGAGGGTCTGCATACTGATTTCGCGTGCTTGATCTTC 8446770 Query 117200 AAGCA 117204 ||||| Sbjct 8446771 AAGCA 8446775 >seq1091 Length=18644 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || ||||| || ||||| || || |||| || || ||| Sbjct 1265 AATGCAGATTTTTGTGAAGACTCTCACCGGTAAAACTATTACTCTCGAAGTTGAGCCCAG 1324 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | | |||| || |||| ||||| || ||||| ||| | ||||| Sbjct 1325 CGATACCATCGAGAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 1384 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| || ||||| || || || || | || |||||| |||||||| Sbjct 1385 ACAACGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACCCTCTCTGACTACAA 1444 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| |||||| |||| || || | || ||||| Sbjct 1445 CATCCAAAAGGAGTCCACACTTCACTTGGTATTGCG 1480 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || ||||| || || ||||| || | || ||||| ||| Sbjct 1493 AATGCAGATCTTTGTTAAGACTCTCACAGGAAAGACCATTACACTTGAAGTCGAGCCCAG 1552 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | | |||| || |||| ||||| || ||||| ||| | ||||| Sbjct 1553 CGATACCATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 1612 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| || ||||| || || || || | || || ||| |||||||| Sbjct 1613 ACAGCGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACTCTCTCTGACTACAA 1672 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||| ||||| | || || ||||| ||| | ||| Sbjct 1673 CATCCAAAAGGAATCTACTCTACATCTTGTGCTTCGC 1709 >seq3456 Length=47684 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| |||||||| || || |||| || || | | Sbjct 38983 ATGCAAATTTTTGTGAAAACCCTCACTGGCAAAACAATTACACTCGAGGTTGAGCCGAGT 38924 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || |||| | ||| || |||| || || |||||||||||| | || || Sbjct 38923 GATACGATTGAGAACG-TGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCAGATCA 38865 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||||||| | || || || ||||| || || | || || || || ||||| Sbjct 38864 ACAACGACTCATTTTTGCTGGTAAGCAGCTAGAAGAAGGTCGTACGCTTTCTGATTACAA 38805 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| |||||| | || || ||||| ||| Sbjct 38804 TATCCAAAAGGAGTCGACTCTACATCTTGTG 38774 >seq778 Length=21138827 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || | || |||||||| ||||| | || || || | Sbjct 14605947 AAAATGCAGATTTTTGTCAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCT 14606006 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | |||| ||||||| || || || || || ||| | || Sbjct 14606007 TCAGATTCCATTGAAAATGTAAAGGCCAAAATTCAGGATAAGGAAGGTATTCCCCCAGAT 14606066 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| | |||| || ||||| ||||| || || | || || ||| |||||| Sbjct 14606067 CAACAACGTTTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGTACTCTCTCGGACTAC 14606126 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| | || || || | |||||||| Sbjct 14606127 AACATCCAGAAGGAATCTACCCTTCACTTGGTGTTGCG 14606164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515195738205680