Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq778 105 1e-17 >seq778 Length=21138827 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || |||||| || ||| | ||||| |||| ||||||||||| ||| | || |||| | Sbjct 14605946 TAAAATGCAGATTTTTGTCAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCC 14606005 Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654 ||| | ||| ||| |||| |||||||| ||||| |||||||| || || || Sbjct 14606006 TTCAGATTCCATTGAAAATGTAAAGGCCAAAATTCAGGATAAGGAAGGTATTCCCCCAGA 14606065 Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714 ||||||| | | || ||||| || || || |||| ||| | || || | || || Sbjct 14606066 TCAACAACGTTTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGTACTCTCTCGGACTA 14606125 Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || || || ||||| || | || ||||| || ||| | || |||||| ||| Sbjct 14606126 CAACATCCAGAAGGAATCTACCCTTCACTTGGTGTTGCGTCTTCGTGGTGGTGTTA 14606181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755421598422400