Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3456 116 4e-21 seq781 86.0 7e-12 >seq3456 Length=47684 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| ||||||||||||| || || || | || ||||||||||||||||| || Sbjct 38792 CTCCTTTTGGATATTGTAATCAGAAAGCGTACGACCTTCTTCTAGCTGCTTACCAGCAAA 38851 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 |||||||| || || || | || | || |||||| ||| ||| | || | || | Sbjct 38852 AATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTATCC-TGAATCTTCGACTTCACGT 38910 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | ||| || |||| || || |||| || || |||||||| || || || || | Sbjct 38911 TCTCAATCGTATCACTCGGCTCAACCTCGAGTGTAATTGTTTTGCCAGTGAGGGTTTTCA 38970 Query 43171 CAAAGATTTGCAT 43183 |||| |||||||| Sbjct 38971 CAAAAATTTGCAT 38983 >seq781 Length=13122981 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3951920 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3951861 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3951860 TACTATCGCGGA 3951849 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3954759 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3954700 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3954699 TACTATCGCGGA 3954688 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3955710 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3955769 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3955770 TACTATCGCGGA 3955781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571791560856040