Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1091 104 2e-17 seq3456 93.3 3e-14 seq778 84.2 1e-11 >seq1091 Length=18644 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || |||| |||| ||| || || ||||||||||| || || ||| | || Sbjct 1705 AGCACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCT 1646 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| || || || || ||||| ||||| ||| | || |||||||| Sbjct 1645 TCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 1586 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | |||| | | ||||| || | || ||||| Sbjct 1585 TGAATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACTTCAAGTGTAATGGTC 1526 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||||||| || |||||||||||||| Sbjct 1525 TTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 1494 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||| || || ||| | || || | |||||||| || || Sbjct 1456 TCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAG 1397 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || || || ||||| ||| | || |||||||| ||||| ||||| || Sbjct 1396 ATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTC 1337 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| | | || || || | || || ||||| ||||||||||| |||||| Sbjct 1336 TCGATGGTATCGCTGGGCTCAACTTCGAGAGTAATAGTTTTACCGGTGAGAGTCTTCACA 1277 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 1276 AAAATCTGCAT 1266 >seq3456 Length=47684 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| ||||| || || | ||||| || |||| ||| || || || || ||||| || Sbjct 38753 GAAACCGCCACGAAGACGAAGCACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATC 38812 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 || ||| ||| | || || | |||||| || || |||||||| || || || || Sbjct 38813 AGAAAGCGTACGACCTTCTTCTAGCTGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGG 38872 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 ||| | || |||||| || ||||| ||| | | | |||| ||| ||| || Sbjct 38873 GGGGATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTCTCAATCGTATCACTCGGCTC 38932 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | || || |||||||| ||||| ||||||||||| || ||||| Sbjct 38933 AACCTCGAGTGTAATTGTTTTGCCAGTGAGGGTTTTCACAAAAATTTGCAT 38983 >seq778 Length=21138827 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | ||| ||| ||||| ||||||||||| || Sbjct 14606176 CCACCACGAAGACGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAG 14606117 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || || | ||||||||| || || || | || || || || ||| Sbjct 14606116 AGAGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGA 14606057 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||||| || || ||||| ||||| || | || ||||| | | || | Sbjct 14606056 ATACCTTCCTTATC--CTGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTCAA 14605999 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||| |||||||| || | ||| || ||||| |||||||| Sbjct 14605998 CTTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCAT 14605950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323057655906080