Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1091 86.0 5e-12 >seq1091 Length=18644 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||||||||| || ||| |||||| || ||||||||||| || ||| | || Sbjct 1477 AATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATCT 1418 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| || || || || || | || |||||||| || || | || |||||||| Sbjct 1417 TCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 1358 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | | | || | ||| || || | ||||| || Sbjct 1357 TGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAACTTCGAGAGTAATAGTT 1298 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||||||||| || ||||| Sbjct 1297 TTACCGGTGAGAGTCTTCACAAAAATCTGCAT 1266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395057659031503