Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq779 172 5e-38 >seq779 Length=16055361 Score = 172 bits (190), Expect = 5e-38 Identities = 507/778 (65%), Gaps = 14/778 (2%) Strand=Plus/Plus Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587 |||||| |||| ||||| || | || ||| |||| | || || ||| | | ||||| Sbjct 8446165 AATCCCGGTAGGTTTGTAATCATGCCCATTCAATACCACGATATCTGGGAGTTCTACAAG 8446224 Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGAT 57647 ||||| | || || || |||||||| || || || ||| || | || ||||| | || Sbjct 8446225 AAGGCTGTGGCTTCCTTCTGGACCGTGGAGGAGGTTGACTTGACGAAAGATCTCACTGAC 8446284 Query 57648 TGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707 ||||| || || || ||| | ||||||| ||||| |||| || ||||| Sbjct 8446285 TGGGAGGGACTGAACGACGGGGAGCGTCATTTTATCTCCCACGTTCTGGCTTTCTTCGCT 8446344 Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTG 57767 || || ||||| || ||||||||| | | | || | ||||| || ||| | Sbjct 8446345 GCCAGTGACGGTATCGTGAACGAGAATCTCTGCATGAACTTCTGCCAAGAGGTTCAAATC 8446404 Query 57768 ACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATG 57827 | || || | || || || || | ||| | ||| |||| || | || || || ||| Sbjct 8446405 CCTGAAGCTCGTTGTTTCTATGGGATGCAAATTGCCGTTGAGAATATCCACTCGGAGATG 8446464 Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAACGTAGACTGTTCA 57885 || || || ||||| ||||| || ||||| || | | | | | || | || |||| Sbjct 8446465 TACTCACTCCTCATTGATACTTATGTGAAAGAGCCTGCCAAGCGTGACTTC--CTCTTCA 8446522 Query 57886 ACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGAT-- 57943 | ||||| || || |||| | |||||||| || ||| | | | ||||| Sbjct 8446523 ATGCGATTGAGACTTTGCCGTGTGTGAAGAAGAAGGCGGATTGGGCCCTGAGGTGGATCG 8446582 Query 57944 ---AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGG 58000 | |||| ||| | ||| || ||| | | | ||||| || || || || || Sbjct 8446583 GGAACAAAG----ACG-CGTCGTATGCGGAGCGTGTTGTGGCGTTTGCAGCTGTAGAGGG 8446637 Query 58001 TATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCC 58060 | ||||||| ||||| || || |||| || ||| ||||||| || || | ||||| Sbjct 8446638 TGTATTCTTCTCGGGTTCATTCGCCTCAATCTTCTGGCTGAAGAAGCGTGGTTTAATGCC 8446697 Query 58061 CGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGC 58120 || || || || || || |||||||| ||||| |||||||| ||||||||||| || Sbjct 8446698 TGGTCTCACTTTCAGTAATGAGTTGATTAGCCGCGATGAGGGTCTGCATACTGATTTCGC 8446757 Query 58121 GTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTAT 58180 |||| | || | | ||| | || || || ||| || | || ||| || || || Sbjct 8446758 GTGCTTGATCTTCAAGCACGTAGTGAACAAGCCGTCGGCTAAGCGTGTCTACGAGATCAT 8446817 Query 58181 CACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCT 58240 || || || | ||| || || || |||| ||||| || || || | || | Sbjct 8446818 GCGTGATGCAGTTGAGATTGAGTGCGAATTCCTCACTGAAGCTCTTCCCGTTGATTTGAT 8446877 Query 58241 CGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298 || |||||| | |||||||| | |||||| ||||| || ||| | ||| || Sbjct 8446878 AGGCATGAACTGTCGTTTGATGTGCCAATACATTAGATTTGTCGCTGACCGCCTTCTG 8446935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445746100912560