Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq779 235 7e-57 seq3534 215 6e-51 seq1079 215 6e-51 seq2512 197 2e-45 >seq779 Length=16055361 Score = 235 bits (260), Expect = 7e-57 Identities = 447/648 (69%), Gaps = 15/648 (2%) Strand=Plus/Minus Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCG 33626 || || || ||||| || |||||||| ||||||||||| || | ||||| || || Sbjct 8446775 TGCTTGAAGATCAAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCA 8446716 Query 33627 TTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33686 ||| || ||||| || ||||||| |||||||| || ||||| || || || |||||| Sbjct 8446715 TTACTGAAAGTGAGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAAT 8446656 Query 33687 GATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33746 || || || ||||| | || ||||| || ||||| || | || | ||| |||| || Sbjct 8446655 GAACCCGAGAAGAATACACCCTCTACAGCTGCAAACGCCACAACACGCTCCGCATA--CG 8446598 Query 33747 GCGCTGTC-ATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 ||| ||| ||| |||||| | | |||||||| |||||||| || ||||| ||| Sbjct 8446597 ACGC-GTCTTTGTTCCCGATCCACCTCAGGGCCCAATCCGCCTTCTTCTTCACACACGGC 8446539 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860 | || || || ||||| ||||| ||| | | ||||| ||||||||||| Sbjct 8446538 AAAGTCTCAATCGCATTGAAGAGGAAGTCACGCTTGGCAGGCTCTTTCACATAAGTATCA 8446479 Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 || | || ||||| ||||| || || || |||| ||| || || | || |||||| Sbjct 8446478 ATGAGGAGTGAGTACATCTCCGAGTGGATATTCTCAACGGCAATTTGCATCCCATAGAAA 8446419 Query 33921 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC-TGC-TAAATTTTCATTCA 33978 || | ||| || | || || || ||| || || |||| ||| | ||| || |||| Sbjct 8446418 CAACGAGCTTCAGGGATTTGAACCTCTTGGCAGAA--GTTCATGCAGAGATTCTCGTTCA 8446361 Query 33979 CTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCT 34037 | || || |||||||| || || || |||| || || ||||||| | | | | Sbjct 8446360 CGATACCGTCACTGGCAGCGAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCCCCGT 8446301 Query 34038 GGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 34097 || | ||| | ||| ||| ||| |||||| | | || || || ||||| ||||| Sbjct 8446300 CGT-TCAGTCCCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAG 8446242 Query 34098 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 || || ||| | ||||| || || | | |||||| || || ||||| || || | || Sbjct 8446241 AAGGAAGCCACAGCCTTCTTGTAGAACTCCCAGATATCGTGGTATTGAATGGGCATGATT 8446182 Query 34158 ACAAATCTATTTGGATTTGGTGCAAGGATAGGTTCCATAACTAAATTA 34205 ||||| ||| ||||| || ||||||| ||||| ||| | ||||| Sbjct 8446181 ACAAACCTACCGGGATTGGGCTCAAGGATGGGTTCGATAGCCTAATTA 8446134 >seq3534 Length=36356 Score = 215 bits (238), Expect = 6e-51 Identities = 417/613 (68%), Gaps = 2/613 (0%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||||||||| |||||||| | ||| | ||| ||||| | ||| ||| || | Sbjct 23100 TTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGGCATTCGTGAGGATCCATGAAAGT 23159 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||||| | ||||| | || | | ||| || |||||||||||||| ||||| | ||| Sbjct 23160 CCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAA 23219 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 |||||||| | | | ||||| ||| || || | || || | |||| || Sbjct 23220 GAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTCTGCGCAGCTCCATGAACTGCAA 23279 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | ||||| ||||| ||||| | ||||| || | | | || || || || || || || Sbjct 23280 GACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACC 23339 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 |||||| | || ||||||||| |||| || |||| | ||| |||| | || || || Sbjct 23340 CTGATCCACATACCTAGCGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGA 23399 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 | ||||||||| |||| |||| | || || ||||||| | || || || Sbjct 23400 TTCACCATTGGTTCCGGCGATAAAAGTACCCTTGCTACGAATACAATGAACATTAAGGCC 23459 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 | ||||| || | || ||||| || || ||| |||| | || || ||||| || || Sbjct 23460 AACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTC 23519 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCC 63667 || || ||||| |||| | ||||| |||||||| |||||||| || | || || Sbjct 23520 AATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCC 23579 Query 63668 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63727 || ||| || | || || || || || || ||||| || | ||| | ||||| |||||| Sbjct 23580 CGAATTGAAGAGAGTCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGT 23639 Query 63728 CTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63786 ||||| || | || | ||| || | || || || | | |||||||| ||||||| Sbjct 23640 CTCAAAGGCAGCTTCGAGATCATCACCG-TGGATACCCAAGGACACACGCATAAACATGT 23698 Query 63787 GCTGAGGTCTTTC 63799 |||| ||||| || Sbjct 23699 GCTGGGGTCTCTC 23711 Score = 107 bits (118), Expect = 2e-18 Identities = 311/473 (66%), Gaps = 17/473 (4%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 21708 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 21767 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 || || || || ||||| |||| |||||||| || | || ||| | || Sbjct 21768 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 21827 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || ||| |||| ||||| |||||||| ||||| ||||| | | | |||||||| Sbjct 21828 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 21887 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62276 | | || ||||| || |||| ||| ||||| | ||| |||| | ||| ||||| Sbjct 21888 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 21947 Query 62277 TCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTACCATAAT--CCTATTCTTGA 62331 ||||||| || | | ||||| || || | | ||||| || || |||| Sbjct 21948 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 22005 Query 62332 TCTCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--GTTAAC 62386 | ||| ||| | | | | ||| | | |||| | | ||| || || || Sbjct 22006 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 22060 Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 | ||||| |||||||| | || | || | ||| |||||| ||| ||||| Sbjct 22061 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 22120 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 |||||| | ||||| | |||||||||||||||||||| ||||| |||||| Sbjct 22121 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 22173 >seq1079 Length=19334 Score = 215 bits (238), Expect = 6e-51 Identities = 417/613 (68%), Gaps = 2/613 (0%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||||||||| |||||||| | ||| | ||| ||||| | ||| ||| || | Sbjct 5777 TTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGGCATTCGTGAGGATCCATGAAAGT 5718 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||||| | ||||| | || | | ||| || |||||||||||||| ||||| | ||| Sbjct 5717 CCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAA 5658 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 |||||||| | | | ||||| ||| || || | || || | |||| || Sbjct 5657 GAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTCTGCGCAGCTCCATGAACTGCAA 5598 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | ||||| ||||| ||||| | ||||| || | | | || || || || || || || Sbjct 5597 GACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACC 5538 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 |||||| | || ||||||||| |||| || |||| | ||| |||| | || || || Sbjct 5537 CTGATCCACATACCTAGCGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGA 5478 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 | ||||||||| |||| |||| | || || ||||||| | || || || Sbjct 5477 TTCACCATTGGTTCCGGCGATAAAAGTACCCTTGCTACGAATACAATGAACATTAAGGCC 5418 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 | ||||| || | || ||||| || || ||| |||| | || || ||||| || || Sbjct 5417 AACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTC 5358 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCC 63667 || || ||||| |||| | ||||| |||||||| |||||||| || | || || Sbjct 5357 AATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCC 5298 Query 63668 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63727 || ||| || | || || || || || || ||||| || | ||| | ||||| |||||| Sbjct 5297 CGAATTGAAGAGAGTCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGT 5238 Query 63728 CTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63786 ||||| || | || | ||| || | || || || | | |||||||| ||||||| Sbjct 5237 CTCAAAGGCAGCTTCGAGATCATCACCG-TGGATACCCAAGGACACACGCATAAACATGT 5179 Query 63787 GCTGAGGTCTTTC 63799 |||| ||||| || Sbjct 5178 GCTGGGGTCTCTC 5166 Score = 107 bits (118), Expect = 2e-18 Identities = 311/473 (66%), Gaps = 17/473 (4%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 7169 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 7110 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 || || || || ||||| |||| |||||||| || | || ||| | || Sbjct 7109 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 7050 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || ||| |||| ||||| |||||||| ||||| ||||| | | | |||||||| Sbjct 7049 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 6990 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62276 | | || ||||| || |||| ||| ||||| | ||| |||| | ||| ||||| Sbjct 6989 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 6930 Query 62277 TCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTACCATAAT--CCTATTCTTGA 62331 ||||||| || | | ||||| || || | | ||||| || || |||| Sbjct 6929 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 6872 Query 62332 TCTCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--GTTAAC 62386 | ||| ||| | | | | ||| | | |||| | | ||| || || || Sbjct 6871 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 6817 Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 | ||||| |||||||| | || | || | ||| |||||| ||| ||||| Sbjct 6816 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 6757 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 |||||| | ||||| | |||||||||||||||||||| ||||| |||||| Sbjct 6756 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 6704 >seq2512 Length=2172 Score = 197 bits (218), Expect = 2e-45 Identities = 361/526 (69%), Gaps = 2/526 (0%) Strand=Plus/Plus Query 63275 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTT 63334 ||| || |||||||||||||| ||||| | ||| |||||||| | | | ||||| Sbjct 5 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 64 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 ||| || || | || || | |||| || | ||||| ||||| ||||| | || Sbjct 65 TCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATA 124 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454 ||| || | | | || || || || || || |||||||| | || ||||||||| |||| Sbjct 125 TATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATT 184 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCC 63514 || |||| | ||| |||| | || || ||| ||||||||| |||| |||| | Sbjct 185 GTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 244 Query 63515 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 || || ||||||| | || || || | ||||| || | || ||||| || Sbjct 245 ACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAA 304 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 || ||| |||| | || || ||||| || || || || ||||| |||| | ||||| Sbjct 305 AGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAG 364 Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694 |||||||| |||||||| || | || |||| ||| || | || || || || || Sbjct 365 GAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATG 424 Query 63695 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATT 63753 || ||||| || | ||| | ||||| ||||||||||| || | || | ||| || Sbjct 425 GGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACC 484 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 | || || || | | |||||||| ||||||||||| ||||| || Sbjct 485 G-TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629788919681040