Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3534 154 1e-32 seq2512 154 1e-32 seq1079 154 1e-32 >seq3534 Length=36356 Score = 154 bits (170), Expect = 1e-32 Identities = 296/431 (69%), Gaps = 4/431 (1%) Strand=Plus/Plus Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 ||||| |||||| ||||||| ||| || | | || || || | |||| || ||||| Sbjct 23283 ATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTG 23342 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 || | ||| ||| | ||| |||| || | || | ||| || || | ||||| |||| Sbjct 23343 ATCCACATACCTAGCGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGATTC 23402 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCT-CGTATATTACTTATCGACAAT-CCT 38298 || || | |||| ||| |||||||||| ||| || ||| | | | | || || Sbjct 23403 ACCATTGGTTCCGGCGATAAAAGTACCCTT-GCTACGAATACAA-TGAACATTAAGGCCA 23460 Query 38299 ATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCT 38358 | || || || | ||||| || ||||| |||||||| | ||||| | ||||| || Sbjct 23461 ACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCA 23520 Query 38359 ATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCG 38418 |||||||||||||| |||| |||| ||||| || ||||||||||| | ||| || || Sbjct 23521 ATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCC 23580 Query 38419 GCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTT 38478 | || || | || || || ||||| ||||||| || | |||| || || || Sbjct 23581 GAATTGAAGAGAGTCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTC 23640 Query 38479 TCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGT 38538 || | || | || | |||| | ||||| ||||| | || || | ||| | ||| || Sbjct 23641 TCAAAGGCAGCTTCGAGATCATCACCGTGGATACCCAAGGACACACGCATAAACATGTGC 23700 Query 38539 TGTGGTCTTTC 38549 || ||||| || Sbjct 23701 TGGGGTCTCTC 23711 >seq2512 Length=2172 Score = 154 bits (170), Expect = 1e-32 Identities = 296/431 (69%), Gaps = 4/431 (1%) Strand=Plus/Plus Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 ||||| |||||| ||||||| ||| || | | || || || | |||| || ||||| Sbjct 101 ATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTG 160 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 || | ||| ||| | ||| |||| || | || | ||| || || | ||||| |||| Sbjct 161 ATCCACATACCTAGCGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGATTC 220 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCT-CGTATATTACTTATCGACAAT-CCT 38298 || || | |||| ||| |||||||||| ||| || ||| | | | | || || Sbjct 221 ACCATTGGTTCCGGCGATAAAAGTACCCTT-GCTACGAATACAA-TGAACATTAAGGCCA 278 Query 38299 ATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCT 38358 | || || || | ||||| || ||||| |||||||| | ||||| | ||||| || Sbjct 279 ACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCA 338 Query 38359 ATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCG 38418 |||||||||||||| |||| |||| ||||| || ||||||||||| | ||| || || Sbjct 339 ATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCC 398 Query 38419 GCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTT 38478 | || || | || || || ||||| ||||||| || | |||| || || || Sbjct 399 GAATTGAAGAGAGTCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTC 458 Query 38479 TCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGT 38538 || | || | || | |||| | ||||| ||||| | || || | ||| | ||| || Sbjct 459 TCAAAGGCAGCTTCGAGATCATCACCGTGGATACCCAAGGACACACGCATAAACATGTGC 518 Query 38539 TGTGGTCTTTC 38549 || ||||| || Sbjct 519 TGGGGTCTCTC 529 >seq1079 Length=19334 Score = 154 bits (170), Expect = 1e-32 Identities = 296/431 (69%), Gaps = 4/431 (1%) Strand=Plus/Minus Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 ||||| |||||| ||||||| ||| || | | || || || | |||| || ||||| Sbjct 5594 ATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTG 5535 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 || | ||| ||| | ||| |||| || | || | ||| || || | ||||| |||| Sbjct 5534 ATCCACATACCTAGCGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGATTC 5475 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCT-CGTATATTACTTATCGACAAT-CCT 38298 || || | |||| ||| |||||||||| ||| || ||| | | | | || || Sbjct 5474 ACCATTGGTTCCGGCGATAAAAGTACCCTT-GCTACGAATACAA-TGAACATTAAGGCCA 5417 Query 38299 ATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCT 38358 | || || || | ||||| || ||||| |||||||| | ||||| | ||||| || Sbjct 5416 ACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCA 5357 Query 38359 ATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCG 38418 |||||||||||||| |||| |||| ||||| || ||||||||||| | ||| || || Sbjct 5356 ATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCC 5297 Query 38419 GCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTT 38478 | || || | || || || ||||| ||||||| || | |||| || || || Sbjct 5296 GAATTGAAGAGAGTCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTC 5237 Query 38479 TCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGT 38538 || | || | || | |||| | ||||| ||||| | || || | ||| | ||| || Sbjct 5236 TCAAAGGCAGCTTCGAGATCATCACCGTGGATACCCAAGGACACACGCATAAACATGTGC 5177 Query 38539 TGTGGTCTTTC 38549 || ||||| || Sbjct 5176 TGGGGTCTCTC 5166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468503464551920