Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3534 241 2e-58 seq1079 241 2e-58 seq779 224 1e-53 seq2512 219 6e-52 >seq3534 Length=36356 Score = 241 bits (266), Expect = 2e-58 Identities = 425/614 (69%), Gaps = 4/614 (1%) Strand=Plus/Plus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||||||||| |||||||| | ||| ||||| ||||| | ||| ||| || | Sbjct 23100 TTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGGCATTCGTGAGGATCCATGAAAGT 23159 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||||| | ||||| | || | | ||| || |||||||||||||| ||||| | ||| Sbjct 23160 CCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAA 23219 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | |||||| | | | ||||| ||| || || | || || | |||| || Sbjct 23220 GAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTCTGCGCAGCTCCATGAACTGCAA 23279 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | |||| ||||| ||||| | ||||| || | | | || || || || || || || Sbjct 23280 GACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACC 23339 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 |||||| | || ||||||||| |||| || |||| | ||| |||| | |||||||| Sbjct 23340 CTGATCCACATACCTAGCGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGA 23399 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC-ACGAATATTACTAATTGATAGAC 66339 | ||||||||| |||| |||| | | || ||||| ||||||| | || || | Sbjct 23400 TTCACCATTGGTTCCGGCGATAAAAGTACC-CTTGCTACGAATACAATGAACATTAAGGC 23458 Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 66399 | | ||||| || | || ||||| || || ||| |||| | ||||| ||||| |||| Sbjct 23459 CAACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCT 23518 Query 66400 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 66459 | ||||| |||||| |||| | ||||| |||||||| |||||||| || || | Sbjct 23519 CAATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGC 23578 Query 66460 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 66519 ||| ||| || | || || || || || || ||||| || | ||| | ||||| ||||| Sbjct 23579 CCGAATTGAAGAGAGTCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACG 23638 Query 66520 TCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 |||||| || | || | ||| || | || || || | | |||||||| |||||| Sbjct 23639 TCTCAAAGGCAGCTTCGAGATCATCACCG-TGGATACCCAAGGACACACGCATAAACATG 23697 Query 66579 TGCTGAGGTCTTTC 66592 ||||| ||||| || Sbjct 23698 TGCTGGGGTCTCTC 23711 Score = 116 bits (128), Expect = 5e-21 Identities = 313/473 (66%), Gaps = 17/473 (4%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 21708 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 21767 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 || || || || ||||| |||| |||||||| || | || ||| | || Sbjct 21768 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 21827 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || ||| |||| ||||| |||||||| ||||| ||||| | | | |||||||| Sbjct 21828 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 21887 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 65069 | | || ||||| || |||||||| ||||| | ||| |||| | ||| ||||| Sbjct 21888 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 21947 Query 65070 TCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTGA 65124 ||||||| || | | ||||| || || | || ||||| || || |||| Sbjct 21948 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 22005 Query 65125 TCTCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--ATTAAC 65179 | ||| ||| | | | | ||| | | |||| | | ||| || ||| || Sbjct 22006 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 22060 Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 | || || |||||||| | || | || | ||| |||||| ||| ||||| Sbjct 22061 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 22120 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 |||||| | ||||| | |||||||||||||||||||| ||||| |||||| Sbjct 22121 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 22173 >seq1079 Length=19334 Score = 241 bits (266), Expect = 2e-58 Identities = 425/614 (69%), Gaps = 4/614 (1%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||||||||| |||||||| | ||| ||||| ||||| | ||| ||| || | Sbjct 5777 TTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGGCATTCGTGAGGATCCATGAAAGT 5718 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||||| | ||||| | || | | ||| || |||||||||||||| ||||| | ||| Sbjct 5717 CCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAA 5658 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | |||||| | | | ||||| ||| || || | || || | |||| || Sbjct 5657 GAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTCTGCGCAGCTCCATGAACTGCAA 5598 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | |||| ||||| ||||| | ||||| || | | | || || || || || || || Sbjct 5597 GACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACC 5538 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 |||||| | || ||||||||| |||| || |||| | ||| |||| | |||||||| Sbjct 5537 CTGATCCACATACCTAGCGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGA 5478 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC-ACGAATATTACTAATTGATAGAC 66339 | ||||||||| |||| |||| | | || ||||| ||||||| | || || | Sbjct 5477 TTCACCATTGGTTCCGGCGATAAAAGTACC-CTTGCTACGAATACAATGAACATTAAGGC 5419 Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 66399 | | ||||| || | || ||||| || || ||| |||| | ||||| ||||| |||| Sbjct 5418 CAACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCT 5359 Query 66400 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 66459 | ||||| |||||| |||| | ||||| |||||||| |||||||| || || | Sbjct 5358 CAATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGC 5299 Query 66460 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 66519 ||| ||| || | || || || || || || ||||| || | ||| | ||||| ||||| Sbjct 5298 CCGAATTGAAGAGAGTCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACG 5239 Query 66520 TCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 |||||| || | || | ||| || | || || || | | |||||||| |||||| Sbjct 5238 TCTCAAAGGCAGCTTCGAGATCATCACCG-TGGATACCCAAGGACACACGCATAAACATG 5180 Query 66579 TGCTGAGGTCTTTC 66592 ||||| ||||| || Sbjct 5179 TGCTGGGGTCTCTC 5166 Score = 116 bits (128), Expect = 5e-21 Identities = 313/473 (66%), Gaps = 17/473 (4%) Strand=Plus/Minus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 7169 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 7110 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 || || || || ||||| |||| |||||||| || | || ||| | || Sbjct 7109 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 7050 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || ||| |||| ||||| |||||||| ||||| ||||| | | | |||||||| Sbjct 7049 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 6990 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 65069 | | || ||||| || |||||||| ||||| | ||| |||| | ||| ||||| Sbjct 6989 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 6930 Query 65070 TCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTGA 65124 ||||||| || | | ||||| || || | || ||||| || || |||| Sbjct 6929 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 6872 Query 65125 TCTCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--ATTAAC 65179 | ||| ||| | | | | ||| | | |||| | | ||| || ||| || Sbjct 6871 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 6817 Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 | || || |||||||| | || | || | ||| |||||| ||| ||||| Sbjct 6816 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 6757 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 |||||| | ||||| | |||||||||||||||||||| ||||| |||||| Sbjct 6756 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 6704 >seq779 Length=16055361 Score = 224 bits (248), Expect = 1e-53 Identities = 442/645 (69%), Gaps = 9/645 (1%) Strand=Plus/Minus Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 || || || ||||| || |||||||| || |||||||| || | ||||| || || Sbjct 8446775 TGCTTGAAGATCAAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCA 8446716 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262 || || ||||| || ||||||| |||||||| || ||||| || || || || ||| Sbjct 8446715 TTACTGAAAGTGAGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAAT 8446656 Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--AC 36320 || || || ||||| | || ||||| || ||||| || | || | ||| |||| || Sbjct 8446655 GAACCCGAGAAGAATACACCCTCTACAGCTGCAAACGCCACAACACGCTCCGCATACGAC 8446596 Query 36321 -CGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 36379 || | ||| |||||| | | |||||||| |||||||| || ||||| |||| Sbjct 8446595 GCGTCTTTGTTCCCGATCCACCTCAGGGCCCAATCCGCCTTCTTCTTCACACACGGCAAA 8446536 Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 ||||| || ||||| ||||| ||| | | ||||| ||||| |||||||| Sbjct 8446535 GTCTCAATCGCATTGAAGAGGAAGTCACGCTTGGCAGGCTCTTTCACATAAGTATCAATG 8446476 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 | || ||||| ||||| || || || |||| ||| ||||| | || |||||||| Sbjct 8446475 AGGAGTGAGTACATCTCCGAGTGGATATTCTCAACGGCAATTTGCATCCCATAGAAACAA 8446416 Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC-TGCTAA-ATTTTCATTCACTA 36557 | ||| || | || || || ||| || || |||| ||| | ||| || ||||| | Sbjct 8446415 CGAGCTTCAGGGATTTGAACCTCTTGGCAGAA--GTTCATGCAGAGATTCTCGTTCACGA 8446358 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTTTGGT 36616 | ||||||||||| || || || |||| || || ||||||| | | | | || Sbjct 8446357 TACCGTCACTGGCAGCGAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCCCCGTCGT 8446298 Query 36617 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 36676 | ||| | ||| ||| ||| |||||| | | || || || ||||| ||||| || Sbjct 8446297 -TCAGTCCCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAG 8446239 Query 36677 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 36736 || ||| | ||||| || || | | |||||| || || |||||||| || | || ||| Sbjct 8446238 GAAGCCACAGCCTTCTTGTAGAACTCCCAGATATCGTGGTATTGAATGGGCATGATTACA 8446179 Query 36737 AATCTATTTTGATTTTTTGCAAGGATTGGTTCCATAACTAAATTA 36781 || ||| |||| ||||||| ||||| ||| | ||||| Sbjct 8446178 AACCTACCGGGATTGGGCTCAAGGATGGGTTCGATAGCCTAATTA 8446134 >seq2512 Length=2172 Score = 219 bits (242), Expect = 6e-52 Identities = 368/527 (70%), Gaps = 4/527 (1%) Strand=Plus/Plus Query 66068 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTT 66127 ||| || |||||||||||||| ||||| | ||| | |||||| | | | ||||| Sbjct 5 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 64 Query 66128 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187 ||| || || | || || | |||| || | |||| ||||| ||||| | || Sbjct 65 TCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATA 124 Query 66188 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247 ||| || | | | || || || || || || |||||||| | || ||||||||| |||| Sbjct 125 TATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATT 184 Query 66248 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 66307 || |||| | ||| |||| | ||||||||| ||||||||| |||| |||| | | Sbjct 185 GTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 244 Query 66308 TCCACTTGC-ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 66366 || ||||| ||||||| | || || || | ||||| || | || ||||| | Sbjct 245 ACC-CTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCA 303 Query 66367 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 66426 | || ||| |||| | ||||| ||||| ||||| ||||| |||||| |||| | |||| Sbjct 304 AAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTA 363 Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 | |||||||| |||||||| || || |||| ||| || | || || || || | Sbjct 364 GGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCAT 423 Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCAT 66545 | || ||||| || | ||| | ||||| ||||||||||| || | || | ||| || Sbjct 424 GGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCAC 483 Query 66546 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592 | || || || | | |||||||| ||||||||||| ||||| || Sbjct 484 CG-TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658142828456120