Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3534 266 5e-66 seq1079 266 5e-66 seq2512 230 3e-55 seq779 228 1e-54 >seq3534 Length=36356 Score = 266 bits (294), Expect = 5e-66 Identities = 444/639 (69%), Gaps = 2/639 (0%) Strand=Plus/Plus Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 ||| |||| || | ||||| | ||||||||| |||||||| || | | ||| Sbjct 23074 TCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCA 23133 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953 || ||||||| |||| ||| || | ||||| ||||||| | || | | ||| || Sbjct 23134 GGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAAA 23193 Query 79954 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013 |||||||||||||| ||||| | ||| |||||||| | | | |||||| ||| || Sbjct 23194 AGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGTG 23253 Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073 || | || || | |||| || | ||||| ||||| ||||| | ||||| || Sbjct 23254 TTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGCA 23313 Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 | | | || || || || || || |||||||| | || ||||||||| |||| || ||| Sbjct 23314 AAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACACT 23373 Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193 | | ||| |||| | ||||||||| ||||||||| |||| |||| | | || || Sbjct 23374 CGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACCCTTG 23433 Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253 ||||||| | || || || | ||||| || | || ||||| || || ||| Sbjct 23434 CTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCACAT 23493 Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313 |||| | ||||| ||||| ||||| || || ||||| |||| | ||||| |||||| Sbjct 23494 TGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAACAG 23553 Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || |||||||| || || |||| ||| || | || || || || || || ||| Sbjct 23554 CTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTGAAC 23613 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAAT 80432 || || | ||||| ||||| ||||||||||| || | ||| | ||| || | || || Sbjct 23614 CACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG-TGGAT 23672 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || | | |||||||| ||||||||||| ||||| || Sbjct 23673 ACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 23711 Score = 111 bits (122), Expect = 2e-19 Identities = 312/473 (66%), Gaps = 17/473 (4%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 21708 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 21767 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 || || || || ||||| ||||||||||||| || | || ||| | || Sbjct 21768 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 21827 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || ||| |||| ||||| |||||||| ||||| ||||| | | | |||||||| Sbjct 21828 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 21887 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 78948 | | || ||||| || |||||||| ||||| | ||| |||| | ||| ||||| Sbjct 21888 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 21947 Query 78949 TCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTGA 79003 ||||||| || | | ||||| || || | || ||||| || || |||| Sbjct 21948 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 22005 Query 79004 TCTCTTCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--ATTAAC 79058 | ||| ||| | | | | ||| | | |||| | | ||| || ||| || Sbjct 22006 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 22060 Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 | || || |||||||| | || | || | ||| |||||| ||| ||||| Sbjct 22061 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 22120 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171 || ||| | ||||| | ||||||||||||||||| || ||||| |||||| Sbjct 22121 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 22173 >seq1079 Length=19334 Score = 266 bits (294), Expect = 5e-66 Identities = 444/639 (69%), Gaps = 2/639 (0%) Strand=Plus/Minus Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 ||| |||| || | ||||| | ||||||||| |||||||| || | | ||| Sbjct 5803 TCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCA 5744 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953 || ||||||| |||| ||| || | ||||| ||||||| | || | | ||| || Sbjct 5743 GGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAAA 5684 Query 79954 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013 |||||||||||||| ||||| | ||| |||||||| | | | |||||| ||| || Sbjct 5683 AGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGTG 5624 Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073 || | || || | |||| || | ||||| ||||| ||||| | ||||| || Sbjct 5623 TTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGCA 5564 Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 | | | || || || || || || |||||||| | || ||||||||| |||| || ||| Sbjct 5563 AAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACACT 5504 Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193 | | ||| |||| | ||||||||| ||||||||| |||| |||| | | || || Sbjct 5503 CGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACCCTTG 5444 Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253 ||||||| | || || || | ||||| || | || ||||| || || ||| Sbjct 5443 CTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCACAT 5384 Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313 |||| | ||||| ||||| ||||| || || ||||| |||| | ||||| |||||| Sbjct 5383 TGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAACAG 5324 Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || |||||||| || || |||| ||| || | || || || || || || ||| Sbjct 5323 CTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTGAAC 5264 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAAT 80432 || || | ||||| ||||| ||||||||||| || | ||| | ||| || | || || Sbjct 5263 CACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG-TGGAT 5205 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || | | |||||||| ||||||||||| ||||| || Sbjct 5204 ACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 5166 Score = 111 bits (122), Expect = 2e-19 Identities = 312/473 (66%), Gaps = 17/473 (4%) Strand=Plus/Minus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 7169 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 7110 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 || || || || ||||| ||||||||||||| || | || ||| | || Sbjct 7109 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 7050 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || ||| |||| ||||| |||||||| ||||| ||||| | | | |||||||| Sbjct 7049 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 6990 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 78948 | | || ||||| || |||||||| ||||| | ||| |||| | ||| ||||| Sbjct 6989 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 6930 Query 78949 TCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTGA 79003 ||||||| || | | ||||| || || | || ||||| || || |||| Sbjct 6929 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 6872 Query 79004 TCTCTTCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--ATTAAC 79058 | ||| ||| | | | | ||| | | |||| | | ||| || ||| || Sbjct 6871 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 6817 Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 | || || |||||||| | || | || | ||| |||||| ||| ||||| Sbjct 6816 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 6757 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171 || ||| | ||||| | ||||||||||||||||| || ||||| |||||| Sbjct 6756 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 6704 >seq2512 Length=2172 Score = 230 bits (254), Expect = 3e-55 Identities = 368/526 (70%), Gaps = 2/526 (0%) Strand=Plus/Plus Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006 ||| || |||||||||||||| ||||| | ||| |||||||| | | | |||||| Sbjct 5 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 64 Query 80007 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 ||| || || | || || | |||| || | ||||| ||||| ||||| | || Sbjct 65 TCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATA 124 Query 80067 TATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 80126 ||| || | | | || || || || || || |||||||| | || ||||||||| |||| Sbjct 125 TATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATT 184 Query 80127 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 80186 || |||| | ||| |||| | ||||||||| ||||||||| |||| |||| | | Sbjct 185 GTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 244 Query 80187 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 || || ||||||| | || || || | ||||| || | || ||||| || Sbjct 245 ACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAA 304 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306 || ||| |||| | ||||| ||||| ||||| || || ||||| |||| | ||||| Sbjct 305 AGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAG 364 Query 80307 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 80366 |||||||| |||||||| || || |||| ||| || | || || || || || Sbjct 365 GAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATG 424 Query 80367 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATT 80425 || ||||| || | ||||| ||||| ||||||||||| || | ||| | ||| || Sbjct 425 GGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACC 484 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 | || || || | | |||||||| ||||||||||| ||||| || Sbjct 485 G-TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 529 >seq779 Length=16055361 Score = 228 bits (252), Expect = 1e-54 Identities = 443/647 (68%), Gaps = 13/647 (2%) Strand=Plus/Minus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 || || || ||||| || |||||||| ||||||||||| || | ||||| | || Sbjct 8446775 TGCTTGAAGATCAAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCA 8446716 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 || || ||||| || ||||||| |||||||| || ||||| || || || || ||| Sbjct 8446715 TTACTGAAAGTGAGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAAT 8446656 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 || || || ||||| | || ||||| || ||||| || |||| | ||| |||| | Sbjct 8446655 GAACCCGAGAAGAATACACCCTCTACAGCTGCAAACGCCACAACACGCTCCGCATA--CG 8446598 Query 50125 GCGCTGTC-ATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 50178 ||| ||| ||| |||||| | | |||||||| |||||||| || ||||| ||| Sbjct 8446597 ACGC-GTCTTTGTTCCCGATCCACCTCAGGGCCCAATCCGCCTTCTTCTTCACACACGGC 8446539 Query 50179 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 50238 | || || || ||||| ||||| ||| | | ||||| ||||||||||| Sbjct 8446538 AAAGTCTCAATCGCATTGAAGAGGAAGTCACGCTTGGCAGGCTCTTTCACATAAGTATCA 8446479 Query 50239 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 50298 || | || ||||| ||||| || || || |||| ||| || || | || |||||| Sbjct 8446478 ATGAGGAGTGAGTACATCTCCGAGTGGATATTCTCAACGGCAATTTGCATCCCATAGAAA 8446419 Query 50299 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA-GC-TAAATTTTCATTCA 50356 || | ||| || | || || || ||| || || ||||| || | ||| || |||| Sbjct 8446418 CAACGAGCTTCAGGGATTTGAACCTCTTGGCAGAA--GTTCATGCAGAGATTCTCGTTCA 8446361 Query 50357 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGG 50416 | || ||||||||||| || || || |||| || || |||||||| || | Sbjct 8446360 CGATACCGTCACTGGCAGCGAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCCCCGT 8446301 Query 50417 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAA 50476 | ||| | ||| ||| ||| |||||| | | || || || ||||| ||||| | Sbjct 8446300 CGTTCAGTCCCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGA 8446241 Query 50477 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAA 50536 | || ||| | ||||| || || | | |||||| || || ||||| || || | || | Sbjct 8446240 AGGAAGCCACAGCCTTCTTGTAGAACTCCCAGATATCGTGGTATTGAATGGGCATGATTA 8446181 Query 50537 CAAATCTATTTGGATTTGGTGCAAGGATCGGTTCCATAACTAAATTA 50583 |||| ||| ||||| || ||||||| ||||| ||| | ||||| Sbjct 8446180 CAAACCTACCGGGATTGGGCTCAAGGATGGGTTCGATAGCCTAATTA 8446134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718236091834520