Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12-
11] 3,643 sequences; 182,136,974 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq3534 266 5e-66
seq1079 266 5e-66
seq2512 230 3e-55
seq779 228 1e-54
>seq3534
Length=36356
Score = 266 bits (294), Expect = 5e-66
Identities = 444/639 (69%), Gaps = 2/639 (0%)
Strand=Plus/Plus
Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893
||| |||| || | ||||| | ||||||||| |||||||| || | | |||
Sbjct 23074 TCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCA 23133
Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953
|| ||||||| |||| ||| || | ||||| ||||||| | || | | ||| ||
Sbjct 23134 GGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAAA 23193
Query 79954 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013
|||||||||||||| ||||| | ||| |||||||| | | | |||||| ||| ||
Sbjct 23194 AGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGTG 23253
Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073
|| | || || | |||| || | ||||| ||||| ||||| | ||||| ||
Sbjct 23254 TTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGCA 23313
Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133
| | | || || || || || || |||||||| | || ||||||||| |||| || |||
Sbjct 23314 AAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACACT 23373
Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193
| | ||| |||| | ||||||||| ||||||||| |||| |||| | | || ||
Sbjct 23374 CGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACCCTTG 23433
Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253
||||||| | || || || | ||||| || | || ||||| || || |||
Sbjct 23434 CTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCACAT 23493
Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313
|||| | ||||| ||||| ||||| || || ||||| |||| | ||||| ||||||
Sbjct 23494 TGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAACAG 23553
Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
|| |||||||| || || |||| ||| || | || || || || || || |||
Sbjct 23554 CTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTGAAC 23613
Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAAT 80432
|| || | ||||| ||||| ||||||||||| || | ||| | ||| || | || ||
Sbjct 23614 CACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG-TGGAT 23672
Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471
|| | | |||||||| ||||||||||| ||||| ||
Sbjct 23673 ACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 23711
Score = 111 bits (122), Expect = 2e-19
Identities = 312/473 (66%), Gaps = 17/473 (4%)
Strand=Plus/Plus
Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768
||||| | |||||||| ||| || ||| ||| || || || || |||||||||||
Sbjct 21708 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 21767
Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828
|| || || || ||||| ||||||||||||| || | || ||| | ||
Sbjct 21768 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 21827
Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888
|| ||| |||| ||||| |||||||| ||||| ||||| | | | ||||||||
Sbjct 21828 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 21887
Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 78948
| | || ||||| || |||||||| ||||| | ||| |||| | ||| |||||
Sbjct 21888 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 21947
Query 78949 TCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTGA 79003
||||||| || | | ||||| || || | || ||||| || || ||||
Sbjct 21948 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 22005
Query 79004 TCTCTTCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--ATTAAC 79058
| ||| ||| | | | | ||| | | |||| | | ||| || ||| ||
Sbjct 22006 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 22060
Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118
| || || |||||||| | || | || | ||| |||||| ||| |||||
Sbjct 22061 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 22120
Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171
|| ||| | ||||| | ||||||||||||||||| || ||||| ||||||
Sbjct 22121 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 22173
>seq1079
Length=19334
Score = 266 bits (294), Expect = 5e-66
Identities = 444/639 (69%), Gaps = 2/639 (0%)
Strand=Plus/Minus
Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893
||| |||| || | ||||| | ||||||||| |||||||| || | | |||
Sbjct 5803 TCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCA 5744
Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953
|| ||||||| |||| ||| || | ||||| ||||||| | || | | ||| ||
Sbjct 5743 GGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAAA 5684
Query 79954 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013
|||||||||||||| ||||| | ||| |||||||| | | | |||||| ||| ||
Sbjct 5683 AGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGTG 5624
Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073
|| | || || | |||| || | ||||| ||||| ||||| | ||||| ||
Sbjct 5623 TTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGCA 5564
Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133
| | | || || || || || || |||||||| | || ||||||||| |||| || |||
Sbjct 5563 AAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACACT 5504
Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193
| | ||| |||| | ||||||||| ||||||||| |||| |||| | | || ||
Sbjct 5503 CGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACCCTTG 5444
Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253
||||||| | || || || | ||||| || | || ||||| || || |||
Sbjct 5443 CTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCACAT 5384
Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313
|||| | ||||| ||||| ||||| || || ||||| |||| | ||||| ||||||
Sbjct 5383 TGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAACAG 5324
Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
|| |||||||| || || |||| ||| || | || || || || || || |||
Sbjct 5323 CTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTGAAC 5264
Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAAT 80432
|| || | ||||| ||||| ||||||||||| || | ||| | ||| || | || ||
Sbjct 5263 CACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG-TGGAT 5205
Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471
|| | | |||||||| ||||||||||| ||||| ||
Sbjct 5204 ACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 5166
Score = 111 bits (122), Expect = 2e-19
Identities = 312/473 (66%), Gaps = 17/473 (4%)
Strand=Plus/Minus
Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768
||||| | |||||||| ||| || ||| ||| || || || || |||||||||||
Sbjct 7169 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 7110
Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828
|| || || || ||||| ||||||||||||| || | || ||| | ||
Sbjct 7109 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 7050
Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888
|| ||| |||| ||||| |||||||| ||||| ||||| | | | ||||||||
Sbjct 7049 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 6990
Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 78948
| | || ||||| || |||||||| ||||| | ||| |||| | ||| |||||
Sbjct 6989 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 6930
Query 78949 TCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTGA 79003
||||||| || | | ||||| || || | || ||||| || || ||||
Sbjct 6929 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 6872
Query 79004 TCTCTTCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--ATTAAC 79058
| ||| ||| | | | | ||| | | |||| | | ||| || ||| ||
Sbjct 6871 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 6817
Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118
| || || |||||||| | || | || | ||| |||||| ||| |||||
Sbjct 6816 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 6757
Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171
|| ||| | ||||| | ||||||||||||||||| || ||||| ||||||
Sbjct 6756 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 6704
>seq2512
Length=2172
Score = 230 bits (254), Expect = 3e-55
Identities = 368/526 (70%), Gaps = 2/526 (0%)
Strand=Plus/Plus
Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006
||| || |||||||||||||| ||||| | ||| |||||||| | | | ||||||
Sbjct 5 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 64
Query 80007 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066
||| || || | || || | |||| || | ||||| ||||| ||||| | ||
Sbjct 65 TCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATA 124
Query 80067 TATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 80126
||| || | | | || || || || || || |||||||| | || ||||||||| ||||
Sbjct 125 TATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATT 184
Query 80127 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 80186
|| |||| | ||| |||| | ||||||||| ||||||||| |||| |||| | |
Sbjct 185 GTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 244
Query 80187 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246
|| || ||||||| | || || || | ||||| || | || ||||| ||
Sbjct 245 ACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAA 304
Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306
|| ||| |||| | ||||| ||||| ||||| || || ||||| |||| | |||||
Sbjct 305 AGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAG 364
Query 80307 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 80366
|||||||| |||||||| || || |||| ||| || | || || || || ||
Sbjct 365 GAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATG 424
Query 80367 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATT 80425
|| ||||| || | ||||| ||||| ||||||||||| || | ||| | ||| ||
Sbjct 425 GGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACC 484
Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471
| || || || | | |||||||| ||||||||||| ||||| ||
Sbjct 485 G-TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 529
>seq779
Length=16055361
Score = 228 bits (252), Expect = 1e-54
Identities = 443/647 (68%), Gaps = 13/647 (2%)
Strand=Plus/Minus
Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004
|| || || ||||| || |||||||| ||||||||||| || | ||||| | ||
Sbjct 8446775 TGCTTGAAGATCAAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCA 8446716
Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064
|| || ||||| || ||||||| |||||||| || ||||| || || || || |||
Sbjct 8446715 TTACTGAAAGTGAGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAAT 8446656
Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124
|| || || ||||| | || ||||| || ||||| || |||| | ||| |||| |
Sbjct 8446655 GAACCCGAGAAGAATACACCCTCTACAGCTGCAAACGCCACAACACGCTCCGCATA--CG 8446598
Query 50125 GCGCTGTC-ATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 50178
||| ||| ||| |||||| | | |||||||| |||||||| || ||||| |||
Sbjct 8446597 ACGC-GTCTTTGTTCCCGATCCACCTCAGGGCCCAATCCGCCTTCTTCTTCACACACGGC 8446539
Query 50179 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 50238
| || || || ||||| ||||| ||| | | ||||| |||||||||||
Sbjct 8446538 AAAGTCTCAATCGCATTGAAGAGGAAGTCACGCTTGGCAGGCTCTTTCACATAAGTATCA 8446479
Query 50239 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 50298
|| | || ||||| ||||| || || || |||| ||| || || | || ||||||
Sbjct 8446478 ATGAGGAGTGAGTACATCTCCGAGTGGATATTCTCAACGGCAATTTGCATCCCATAGAAA 8446419
Query 50299 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA-GC-TAAATTTTCATTCA 50356
|| | ||| || | || || || ||| || || ||||| || | ||| || ||||
Sbjct 8446418 CAACGAGCTTCAGGGATTTGAACCTCTTGGCAGAA--GTTCATGCAGAGATTCTCGTTCA 8446361
Query 50357 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGG 50416
| || ||||||||||| || || || |||| || || |||||||| || |
Sbjct 8446360 CGATACCGTCACTGGCAGCGAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCCCCGT 8446301
Query 50417 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAA 50476
| ||| | ||| ||| ||| |||||| | | || || || ||||| ||||| |
Sbjct 8446300 CGTTCAGTCCCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGA 8446241
Query 50477 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAA 50536
| || ||| | ||||| || || | | |||||| || || ||||| || || | || |
Sbjct 8446240 AGGAAGCCACAGCCTTCTTGTAGAACTCCCAGATATCGTGGTATTGAATGGGCATGATTA 8446181
Query 50537 CAAATCTATTTGGATTTGGTGCAAGGATCGGTTCCATAACTAAATTA 50583
|||| ||| ||||| || ||||||| ||||| ||| | |||||
Sbjct 8446180 CAAACCTACCGGGATTGGGCTCAAGGATGGGTTCGATAGCCTAATTA 8446134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718236091834520
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