Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3534 264 2e-65 seq1079 264 2e-65 seq2512 237 2e-57 seq779 221 2e-52 >seq3534 Length=36356 Score = 264 bits (292), Expect = 2e-65 Identities = 448/642 (70%), Gaps = 8/642 (1%) Strand=Plus/Plus Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCC 71975 ||| |||| || | ||||| | ||||||||| |||||||| ||| | | | || Sbjct 23074 TCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCA-GCAGTCAGCCAGGCC 23132 Query 71976 AGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAA 72035 ||| ||||| | ||| ||| || | ||||| ||||||| | || | | ||| || Sbjct 23133 AGGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAA 23192 Query 72036 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095 |||||||||||||| ||||| | ||| |||||||| | | | |||||| ||| || Sbjct 23193 AAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGT 23252 Query 72096 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 || | || || | |||| || | ||||| ||||| ||||| | ||||| || Sbjct 23253 GTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGC 23312 Query 72156 CATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 72215 | | | || || || || || || |||||||| | || ||||||||| |||| || || Sbjct 23313 AAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACAC 23372 Query 72216 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 72275 || | ||| |||| | ||||||||| |||||||||| |||| |||| | | || | Sbjct 23373 TCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACCCTT 23432 Query 72276 GGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 | |||||| | || ||| || || | ||||| || | || ||||| || || Sbjct 23433 GCTACGAATACAATGAACATT--AAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCA 23490 Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 ||| |||| | ||||| ||||| ||||| ||||| |||||| |||| | ||||| ||| Sbjct 23491 CATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAA 23550 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 ||||| |||||||| || || |||| ||| || | || || || || || || Sbjct 23551 CAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTG 23610 Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATG 72512 ||||| || | ||||| ||||| ||||||||||| || | ||| | ||| || | || Sbjct 23611 AACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG-TG 23669 Query 72513 TATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 || || | | |||||||| ||||| ||||| ||||| || Sbjct 23670 GATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 23711 >seq1079 Length=19334 Score = 264 bits (292), Expect = 2e-65 Identities = 448/642 (70%), Gaps = 8/642 (1%) Strand=Plus/Minus Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCC 71975 ||| |||| || | ||||| | ||||||||| |||||||| ||| | | | || Sbjct 5803 TCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCA-GCAGTCAGCCAGGCC 5745 Query 71976 AGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAA 72035 ||| ||||| | ||| ||| || | ||||| ||||||| | || | | ||| || Sbjct 5744 AGGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAA 5685 Query 72036 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095 |||||||||||||| ||||| | ||| |||||||| | | | |||||| ||| || Sbjct 5684 AAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGT 5625 Query 72096 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 || | || || | |||| || | ||||| ||||| ||||| | ||||| || Sbjct 5624 GTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGC 5565 Query 72156 CATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 72215 | | | || || || || || || |||||||| | || ||||||||| |||| || || Sbjct 5564 AAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACAC 5505 Query 72216 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 72275 || | ||| |||| | ||||||||| |||||||||| |||| |||| | | || | Sbjct 5504 TCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACCCTT 5445 Query 72276 GGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 | |||||| | || ||| || || | ||||| || | || ||||| || || Sbjct 5444 GCTACGAATACAATGAACATT--AAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCA 5387 Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 ||| |||| | ||||| ||||| ||||| ||||| |||||| |||| | ||||| ||| Sbjct 5386 CATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAA 5327 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 ||||| |||||||| || || |||| ||| || | || || || || || || Sbjct 5326 CAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTG 5267 Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATG 72512 ||||| || | ||||| ||||| ||||||||||| || | ||| | ||| || | || Sbjct 5266 AACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG-TG 5208 Query 72513 TATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 || || | | |||||||| ||||| ||||| ||||| || Sbjct 5207 GATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 5166 >seq2512 Length=2172 Score = 237 bits (262), Expect = 2e-57 Identities = 372/528 (70%), Gaps = 6/528 (1%) Strand=Plus/Plus Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 72089 ||| || |||||||||||||| ||||| | ||| |||||||| | | | |||||| Sbjct 5 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 64 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 ||| || || | || || | |||| || | ||||| ||||| ||||| | || Sbjct 65 TCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATA 124 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 ||| || | | | || || || || || || |||||||| | || ||||||||| |||| Sbjct 125 TATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATT 184 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 || |||| | ||| |||| | ||||||||| |||||||||| |||| |||| | | Sbjct 185 GTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 244 Query 72270 TCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 72327 || || |||||| | || ||| || || | ||||| || | || ||||| Sbjct 245 ACCCTTGCTACGAATACAATGAACATT--AAGGCCAACGCCCCCAGCGTTCTTTGAGATC 302 Query 72328 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 72387 || || ||| |||| | ||||| ||||| ||||| ||||| |||||| |||| | ||| Sbjct 303 AAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGT 362 Query 72388 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 72447 || |||||||| |||||||| || || |||| ||| || | || || || || Sbjct 363 AGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCA 422 Query 72448 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCA 72506 || || ||||| || | ||||| ||||| ||||||||||| || | ||| | ||| || Sbjct 423 TGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCA 482 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 | || || || | | |||||||| ||||| ||||| ||||| || Sbjct 483 CCG-TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 529 >seq779 Length=16055361 Score = 221 bits (244), Expect = 2e-52 Identities = 441/645 (68%), Gaps = 9/645 (1%) Strand=Plus/Minus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 || || || ||||| || |||||||| |||||||||||||| | ||||| || || Sbjct 8446775 TGCTTGAAGATCAAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCA 8446716 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 || || ||||| || ||||||| |||||||| || ||||| || || || || ||| Sbjct 8446715 TTACTGAAAGTGAGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAAT 8446656 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--AC 42227 || || || ||||| | || ||||| || ||||| || | || | ||| |||| || Sbjct 8446655 GAACCCGAGAAGAATACACCCTCTACAGCTGCAAACGCCACAACACGCTCCGCATACGAC 8446596 Query 42228 -CGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 42286 || | ||| |||||| | | |||||||| |||||||| || ||||| |||| Sbjct 8446595 GCGTCTTTGTTCCCGATCCACCTCAGGGCCCAATCCGCCTTCTTCTTCACACACGGCAAA 8446536 Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATC 42346 || || || ||||| ||||| ||| | | ||||| ||||| ||||| || Sbjct 8446535 GTCTCAATCGCATTGAAGAGGAAGTCACGCTTGGCAGGCTCTTTCACATAAGTATCAATG 8446476 Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406 | || ||||| || || || || || |||| ||| || || | || |||||||| Sbjct 8446475 AGGAGTGAGTACATCTCCGAGTGGATATTCTCAACGGCAATTTGCATCCCATAGAAACAA 8446416 Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA-GC-TAAATTTTCGTTCACTA 42464 | || || | | || || ||| || || ||||| || | ||| |||||||| | Sbjct 8446415 CGAGCTTCAGGGATTTGAACCTCTTGGCAGAA--GTTCATGCAGAGATTCTCGTTCACGA 8446358 Query 42465 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTG 42524 | ||||||||||| || || || |||| || || ||||||| || ||| | Sbjct 8446357 TACCGTCACTGGCAGCGAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTC-CCCGTCG 8446299 Query 42525 TT-AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAAT 42583 || | | | ||| ||| ||| |||||| | | || || || || || ||||| || Sbjct 8446298 TTCAGTCCCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAG 8446239 Query 42584 GATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACA 42643 || || | ||||| || || | | ||||||||| || |||||||| || | || ||| Sbjct 8446238 GAAGCCACAGCCTTCTTGTAGAACTCCCAGATATCGTGGTATTGAATGGGCATGATTACA 8446179 Query 42644 AATCTATTTGGATTTGGTGCAAGGATCGGTTCCATAACTAAATTA 42688 || ||| ||||| || ||||||| ||||| ||| | ||||| Sbjct 8446178 AACCTACCGGGATTGGGCTCAAGGATGGGTTCGATAGCCTAATTA 8446134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671108637998680