Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3456 86.0 5e-12 >seq3456 Length=47684 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| ||||||||||| | | || | || || ||||| ||||| Sbjct 38787 GTCGACTCCTTTTGGATATTGTAATCAGAAAGCGTACGACCTTCTTCTAGCTGCTTACCA 38846 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| |||| || ||||| ||| | |||||| || || ||| ||| || Sbjct 38847 GCAAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTATCCTGAATCTTCGACTTC 38906 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| | ||||| |||| ||||| ||||| || || | ||| Sbjct 38907 ACGTTCTCAATCGTATCACTCGGCTCAACCTCGAGTGTAATTGTTTTGCCAGTGAGGGTT 38966 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||||||||| Sbjct 38967 TTCACAAAAATTTGCAT 38983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414554393356342