Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3456 154 3e-32 seq778 149 1e-30 >seq3456 Length=47684 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||||| || || || || || ||||| || ||||| || || | ||| || Sbjct 38771 AAGCACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAAAGCGTACGACCTTC 38830 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 |||||| || || ||||||||||| || | |||||||| || || || || || ||||| Sbjct 38831 TTCTAGCTGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTATC 38890 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | || || || || | ||||| || || || ||||| |||||||| || Sbjct 38891 CTGAATCTTCGACTTCACGTTCTCAATCGTATCACTCGGCTCAACCTCGAGTGTAATTGT 38950 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| ||||| || ||||| Sbjct 38951 TTTGCCAGTGAGGGTTTTCACAAAAATTTGCAT 38983 >seq778 Length=21138827 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||| || || ||||| || ||||| | || |||||||| || || ||| Sbjct 14606146 GTAGATTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCCATCTTCTAGCTGCTTGCCA 14606087 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | |||||||| || || || ||||| ||||||||||| || || ||| Sbjct 14606086 GCAAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCCTGAATTTTGGCCTTT 14606027 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || ||| ||| || || || || || ||||| || ||||| | || Sbjct 14606026 ACATTTTCAATGGAATCTGAAGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTTAAAGTC 14605967 Query 104543 TTTACAAATATCTGCATTTT 104562 || ||||| ||||||||||| Sbjct 14605966 TTGACAAAAATCTGCATTTT 14605947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151344657400244