Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1091 95.1 1e-14 >seq1091 Length=18644 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || || ||||||||| ||||||||| |||||||| |||| | || | || Sbjct 1477 AATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATCT 1418 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || || ||||| || | | || | ||| || || || || | | ||||||||| Sbjct 1417 TCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 1358 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||| | | | | ||||||||| | | ||| |||| || || ||| Sbjct 1357 TGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAACTTCGAGAGTAATAGTT 1298 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 |||||||||||||| ||||||||||||||||| || Sbjct 1297 TTACCGGTGAGAGTCTTCACAAAAATCTGCATTGT 1263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421232496841643