Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq778 113 4e-20 seq1091 91.5 1e-13 >seq778 Length=21138827 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||| | ||||||||||| || | ||| || || | ||| | | Sbjct 14606164 CGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCCA 14606105 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || ||||||| || | ||| |||||||| ||||||||||| || Sbjct 14606104 TCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTA 14606045 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| ||||| || | | | || | | || || |||| ||||| Sbjct 14606044 TCCTGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTCAACTTCAAGAGTGATA 14605985 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | ||| || ||||| |||||||| Sbjct 14605984 GTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCAT 14605950 >seq1091 Length=18644 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| || | ||||||||||||||| | ||| || || | || || || ||| || Sbjct 1701 CAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAG--AGAGAGTACGACCATCTTC 1644 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || || ||||||| | | || || ||||| ||||| ||||| ||||| | Sbjct 1643 AAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG 1584 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || ||||| || | | || || | | ||||| |||| || ||||| || Sbjct 1583 AATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACTTCAAGTGTAATGGTCTT 1524 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || |||||||||||||| Sbjct 1523 TCCTGTGAGAGTCTTAACAAAGATCTGCAT 1494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448270785939480