Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq781 190 3e-44 seq780 168 1e-37 seq3 159 5e-35 >seq781 Length=13122981 Score = 190 bits (210), Expect = 3e-44 Identities = 188/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| Sbjct 3286409 CGTGATAACATTCAAGGTATCACTAAGCCAGCTATCCGACGTCTGGCTCGTCGTGGTGGT 3286350 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| |||| || | |||| || |||| ||||| ||| | ||| ||||||| Sbjct 3286349 GTGAAGCGCATCTCCGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTCTTCCTT 3286290 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | |||||| || ||||| |||||||| || || ||||| |||||| Sbjct 3286289 GAGAACGTGATTCGCGATGCTGTCACTTATACGGAGCACGCGAAGCGCAAGACCGTCACC 3286230 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | ||||| ||| | || || |||||||||| | || ||||| || || Sbjct 3286229 GCTATGGATGTTGTCTACGCACTCAAGCGCCAAGGCCGTACCCTCTACGGTTTCGGCGGT 3286170 Query 16697 TAA 16699 ||| Sbjct 3286169 TAA 3286167 >seq780 Length=14665888 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | |||||| ||||| || |||||||| ||||||||||| || Sbjct 10109362 CGCCAAGCGTCACAGGAAGGTTCTTCGTGATAATATTCAAGGAATTACCAAGCCAGCCAT 10109421 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| || ||||| |||||||| || |||||| |||| || | | |||||||| | Sbjct 10109422 TCGTCGCCTTGCTCGACGTGGTGGTGTAAAGCGTATCTCCGGTCTCATTTATGAAGAAAC 10109481 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | |||||| ||| |||||| | ||| ||| | || || || Sbjct 10109482 CCGTGGTGTCCTGAAGGTTTTCCTCGAGAACGTTATTCGTGACGCTGTTACTTACACTGA 10109541 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| || | |||||| | |||||||| | || ||||| || Sbjct 10109542 GCACGCCAAGAGAAAGACTGTTACAGCTATGGATGTTGTCTATGCTCTAAAGCGTCAGGG 10109601 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 10109602 ACGTACTTTGTACGGTTTCGGTGGTTAA 10109629 Score = 147 bits (162), Expect = 3e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||| || || || || || ||||| |||||||| ||||| |||||||| ||| Sbjct 10072451 CTTCGTGATAATATTCAGGGCATTACAAAGCCTGCTATCCGCCGTCTTGCTCGTCGAGGT 10072392 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | || || | |||| ||||| | || | |||| ||||| | || Sbjct 10072391 GGTGTGAAGCGTATTTCCGGCCTTATCTACGAAGAAACCCGCGGTGTTCTGAAGGTTTTT 10072332 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| | | ||||||| ||||| | ||| || ||||| || || | ||||||||| Sbjct 10072331 CTCGAAAATGTTATCCGAGATGCCGTTACCTACACTGAGCATGCCAAGAGGAAGACTGTC 10072272 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | |||||||| ||||||| ||||| || | | || ||||| || Sbjct 10072271 ACCGCCATGGACGTTGTCTATGCTCTGAAACGCCAAGGACGCACCTTGTACGGTTTCGG 10072213 Score = 147 bits (162), Expect = 3e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||| || || || || || ||||| |||||||| ||||| |||||||| ||| Sbjct 10076661 CTTCGTGATAATATTCAGGGCATTACAAAGCCTGCTATCCGCCGTCTTGCTCGTCGAGGT 10076602 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | || || | |||| ||||| | || | |||| ||||| | || Sbjct 10076601 GGTGTGAAGCGTATTTCCGGCCTTATCTACGAAGAAACCCGCGGTGTTCTGAAGGTTTTT 10076542 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| | | ||||||| ||||| | ||| || ||||| || || | ||||||||| Sbjct 10076541 CTCGAAAATGTTATCCGAGATGCCGTTACCTACACTGAGCATGCCAAGAGGAAGACTGTC 10076482 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | |||||||| ||||||| ||||| || | | || ||||| || Sbjct 10076481 ACCGCCATGGACGTTGTCTATGCTCTGAAACGCCAAGGACGCACCTTGTACGGTTTCGG 10076423 >seq3 Length=637720 Score = 159 bits (176), Expect = 5e-35 Identities = 201/275 (73%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| | | ||||| |||||||||||||| ||||||||||| || || Sbjct 54244 CGCTAAGCGTCACAGGAAGGTACTTCGGGATAACATCCAAGGCATCACCAAGCCCGCCAT 54303 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||| ||||| || || || | || || | ||||||| || | Sbjct 54304 TCGTCGTCTAGCACGTCGAGGTGGCGTTAAACGCATTTCCGGTCTTATCTATGAGGAAAC 54363 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| | || | ||||| ||| |||||| ||||| || || ||||| Sbjct 54364 TCGTGGTGTCCTCAAAGTGTTCCTTGAGAATGTTATCAGAGATGCCGTCACTTACACCGA 54423 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||| || || ||||| ||| | |||||| | |||||||| | ||||| || || Sbjct 54424 ACATGCTAAGCGAAAAACTGTTACCGCAATGGATGTGGTCTATGCCCTTAAACGCCAGGG 54483 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA-ATCTTCT 16705 ||||| | || |||||||| | || ||||||| Sbjct 54484 CCGTACTCTCTACGGTTTTGGTGGGTAGATCTTCT 54518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071869179599