Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3534 228 1e-54 seq1079 228 1e-54 seq779 226 4e-54 seq2512 206 3e-48 >seq3534 Length=36356 Score = 228 bits (252), Expect = 1e-54 Identities = 420/613 (69%), Gaps = 2/613 (0%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||||||||| |||||||| | ||| ||||| ||||| | ||| ||| || | Sbjct 23100 TTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGGCATTCGTGAGGATCCATGAAAGT 23159 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||||| | ||||| | || | | ||| || |||||||||||||| ||||| | ||| Sbjct 23160 CCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAA 23219 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 |||||||| | | | ||||| ||| || || | || || | |||| || Sbjct 23220 GAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTCTGCGCAGCTCCATGAACTGCAA 23279 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | ||||| ||||| ||||| | ||||| || | | | || || || || || || || Sbjct 23280 GACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACC 23339 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 |||||| | || ||||||||| |||| || |||| | ||| |||| | || || || Sbjct 23340 CTGATCCACATACCTAGCGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGA 23399 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496 | ||||||||| |||| |||| | | || || ||||||| | || || || Sbjct 23400 TTCACCATTGGTTCCGGCGATAAAAGTACCCTTGCTACGAATACAATGAACATTAAGGCC 23459 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 | ||||| || | || ||||| || || ||| |||| | || || ||||||||||| Sbjct 23460 AACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTC 23519 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616 || || ||||| |||| | ||||| |||||||| |||||||| || || || Sbjct 23520 AATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCC 23579 Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676 || ||| || | || || || || || || ||||| || | ||| | ||||| |||||| Sbjct 23580 CGAATTGAAGAGAGTCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGT 23639 Query 63677 CTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63735 ||||| || | || | ||| || | || || || | | |||||||| ||||||| Sbjct 23640 CTCAAAGGCAGCTTCGAGATCATCACCG-TGGATACCCAAGGACACACGCATAAACATGT 23698 Query 63736 GCTGAGGTCTTTC 63748 |||| ||||| || Sbjct 23699 GCTGGGGTCTCTC 23711 Score = 116 bits (128), Expect = 5e-21 Identities = 313/473 (66%), Gaps = 17/473 (4%) Strand=Plus/Plus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 21708 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 21767 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 || || || || ||||| |||| |||||||| || | || ||| | || Sbjct 21768 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 21827 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || ||| |||| ||||| |||||||| ||||| ||||| | | | |||||||| Sbjct 21828 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 21887 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62225 | | || ||||| || |||||||| ||||| | ||| |||| | ||| ||||| Sbjct 21888 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 21947 Query 62226 TCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTGA 62280 ||||||| || | | ||||| || || | || ||||| || || |||| Sbjct 21948 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 22005 Query 62281 TCTCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--ATTAAC 62335 | ||| ||| | | | | ||| | | |||| | | ||| || ||| || Sbjct 22006 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 22060 Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 | || || |||||||| | || | || | ||| |||||| ||| ||||| Sbjct 22061 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 22120 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448 |||||| | ||||| | |||||||||||||||||||| ||||| |||||| Sbjct 22121 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 22173 >seq1079 Length=19334 Score = 228 bits (252), Expect = 1e-54 Identities = 420/613 (69%), Gaps = 2/613 (0%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||||||||| |||||||| | ||| ||||| ||||| | ||| ||| || | Sbjct 5777 TTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGGCATTCGTGAGGATCCATGAAAGT 5718 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||||| | ||||| | || | | ||| || |||||||||||||| ||||| | ||| Sbjct 5717 CCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAA 5658 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 |||||||| | | | ||||| ||| || || | || || | |||| || Sbjct 5657 GAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTCTGCGCAGCTCCATGAACTGCAA 5598 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 | ||||| ||||| ||||| | ||||| || | | | || || || || || || || Sbjct 5597 GACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACC 5538 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 |||||| | || ||||||||| |||| || |||| | ||| |||| | || || || Sbjct 5537 CTGATCCACATACCTAGCGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGA 5478 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496 | ||||||||| |||| |||| | | || || ||||||| | || || || Sbjct 5477 TTCACCATTGGTTCCGGCGATAAAAGTACCCTTGCTACGAATACAATGAACATTAAGGCC 5418 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 | ||||| || | || ||||| || || ||| |||| | || || ||||||||||| Sbjct 5417 AACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTC 5358 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63616 || || ||||| |||| | ||||| |||||||| |||||||| || || || Sbjct 5357 AATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCC 5298 Query 63617 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63676 || ||| || | || || || || || || ||||| || | ||| | ||||| |||||| Sbjct 5297 CGAATTGAAGAGAGTCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGT 5238 Query 63677 CTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63735 ||||| || | || | ||| || | || || || | | |||||||| ||||||| Sbjct 5237 CTCAAAGGCAGCTTCGAGATCATCACCG-TGGATACCCAAGGACACACGCATAAACATGT 5179 Query 63736 GCTGAGGTCTTTC 63748 |||| ||||| || Sbjct 5178 GCTGGGGTCTCTC 5166 Score = 116 bits (128), Expect = 5e-21 Identities = 313/473 (66%), Gaps = 17/473 (4%) Strand=Plus/Minus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 7169 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 7110 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 || || || || ||||| |||| |||||||| || | || ||| | || Sbjct 7109 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 7050 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || ||| |||| ||||| |||||||| ||||| ||||| | | | |||||||| Sbjct 7049 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 6990 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62225 | | || ||||| || |||||||| ||||| | ||| |||| | ||| ||||| Sbjct 6989 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 6930 Query 62226 TCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTGA 62280 ||||||| || | | ||||| || || | || ||||| || || |||| Sbjct 6929 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 6872 Query 62281 TCTCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--ATTAAC 62335 | ||| ||| | | | | ||| | | |||| | | ||| || ||| || Sbjct 6871 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 6817 Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 | || || |||||||| | || | || | ||| |||||| ||| ||||| Sbjct 6816 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 6757 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448 |||||| | ||||| | |||||||||||||||||||| ||||| |||||| Sbjct 6756 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 6704 >seq779 Length=16055361 Score = 226 bits (250), Expect = 4e-54 Identities = 445/648 (69%), Gaps = 15/648 (2%) Strand=Plus/Minus Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348 || || || ||||| || |||||||| ||||||||||| || | ||||| | || Sbjct 8446775 TGCTTGAAGATCAAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCA 8446716 Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408 || || ||||| || ||||||| |||||||| || ||||| || || || |||||| Sbjct 8446715 TTACTGAAAGTGAGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAAT 8446656 Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33468 || || || ||||| | || ||||| || ||||| || | || | ||| |||| || Sbjct 8446655 GAACCCGAGAAGAATACACCCTCTACAGCTGCAAACGCCACAACACGCTCCGCATA--CG 8446598 Query 33469 GCGCTGTC-ATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33522 ||| ||| ||| |||||| | | |||||||| |||||||| || ||||| ||| Sbjct 8446597 ACGC-GTCTTTGTTCCCGATCCACCTCAGGGCCCAATCCGCCTTCTTCTTCACACACGGC 8446539 Query 33523 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33582 | || || || ||||| ||||| ||| | | ||||| ||||||||||| Sbjct 8446538 AAAGTCTCAATCGCATTGAAGAGGAAGTCACGCTTGGCAGGCTCTTTCACATAAGTATCA 8446479 Query 33583 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33642 || | || ||||| ||||| || || || |||| ||| || || | || |||||| Sbjct 8446478 ATGAGGAGTGAGTACATCTCCGAGTGGATATTCTCAACGGCAATTTGCATCCCATAGAAA 8446419 Query 33643 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC-CGC-CAAATTTTCATTCA 33700 || | ||| || | || || || ||| || || |||| || | ||| || |||| Sbjct 8446418 CAACGAGCTTCAGGGATTTGAACCTCTTGGCAGAA--GTTCATGCAGAGATTCTCGTTCA 8446361 Query 33701 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCT 33759 | || ||||||||||| || || || |||| || || ||||||| | | | | Sbjct 8446360 CGATACCGTCACTGGCAGCGAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCCCCGT 8446301 Query 33760 GGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAA 33819 || | ||| | ||| ||| ||| |||||| | | || || || ||||| ||||| Sbjct 8446300 CGT-TCAGTCCCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAG 8446242 Query 33820 AATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 || || ||| | ||||| || || | | |||||| || | ||||| || || | || Sbjct 8446241 AAGGAAGCCACAGCCTTCTTGTAGAACTCCCAGATATCGTGGTATTGAATGGGCATGATT 8446182 Query 33880 ACAAATCTATTTGGATTTGGTGCAAGGATGGGTTCCATAACTAAATTA 33927 ||||| ||| ||||| || ||||||||||||| ||| | ||||| Sbjct 8446181 ACAAACCTACCGGGATTGGGCTCAAGGATGGGTTCGATAGCCTAATTA 8446134 >seq2512 Length=2172 Score = 206 bits (228), Expect = 3e-48 Identities = 363/526 (69%), Gaps = 2/526 (0%) Strand=Plus/Plus Query 63224 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63283 ||| || |||||||||||||| ||||| | ||| |||||||| | | | ||||| Sbjct 5 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 64 Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 ||| || || | || || | |||| || | ||||| ||||| ||||| | || Sbjct 65 TCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATA 124 Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403 ||| || | | | || || || || || || |||||||| | || ||||||||| |||| Sbjct 125 TATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATT 184 Query 63404 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCT 63463 || |||| | ||| |||| | || || ||| ||||||||| |||| |||| | | Sbjct 185 GTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 244 Query 63464 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 || || ||||||| | || || || | ||||| || | || ||||| || Sbjct 245 ACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAA 304 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583 || ||| |||| | || || ||||||||||| || || ||||| |||| | ||||| Sbjct 305 AGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAG 364 Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643 |||||||| |||||||| || || |||| ||| || | || || || || || Sbjct 365 GAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATG 424 Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATT 63702 || ||||| || | ||| | ||||| ||||||||||| || | || | ||| || Sbjct 425 GGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACC 484 Query 63703 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 | || || || | | |||||||| ||||||||||| ||||| || Sbjct 485 G-TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622918832541880