Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq779 122 2e-22 seq3534 114 3e-20 seq1079 114 3e-20 seq2512 109 1e-18 >seq779 Length=16055361 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| ||||| |||||||| |||| ||||| |||||| || || | ||||| Sbjct 8446549 AAGAAGAAGGCGGATTGGGCCCTGAGGTGGATCGGGAACAAAGACGCGTCGTATGCGGAG 8446608 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| || | || ||||| | || || || | ||||| || || |||| ||||| Sbjct 8446609 CGTGTTGTGGCGTTTGCAGCTGTAGAGGGTGTATTCTTCTCGGGTTCATTCGCCTCAATC 8446668 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA--AATGAGTTAATTA 22609 || ||||| || || |||| | ||||| ||||| || ||||| |||||||| |||| Sbjct 8446669 TTCTGGCTGAAGAAGCGTGGTTTAATGCCTGGTCTCAC--TTTCAGTAATGAGTTGATTA 8446726 Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 |||| ||||||||||| ||||| ||||| ||||| Sbjct 8446727 GCCGCGATGAGGGTCTGCATACTGATTTCGCGTG 8446760 >seq3534 Length=36356 Score = 114 bits (126), Expect = 3e-20 Identities = 428/663 (65%), Gaps = 20/663 (3%) Strand=Plus/Minus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || ||||| ||||| |||||||| | | |||||||| | ||| | || || || Sbjct 23705 CCCCAGCACATGTTTATGCGTGTGTCCTTGGGTATCCACGGTGATGATCTCGAAGCTGCC 23646 Query 363514 ATTGAAACATATAAGCTTCTAAGTGCTC----GTGTATTCACGCACGCCACGCCAACAAT 363569 |||| || || | ||||| ||| ||| ||||| || ||| | || || | Sbjct 23645 TTTGAGACGTACCA---TCTAATGTCTCAGAAGTGG-TTCACCCATGCCTCCCCGACTCT 23590 Query 363570 GTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGA 363629 | |||| | || || | | ||| || ||||| || || || || | ||||||||| Sbjct 23589 CTTCAATTCGGGCACACCAATTCCTCAAATGTCGAGCTGTTTCCTACTCACAATGAAGGA 23530 Query 363630 CGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGC 363689 || || |||||||||| || ||||| || | |||||| | || || ||||| || Sbjct 23529 TGACAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAGAACGC 23470 Query 363690 AGGCGGAATTGGTGTATCGATCCACAATGTTCGT-GCACAGAACAGTTACATTCGCGGCA 363748 || || |||| | | || | ||||| ||| || | || || ||| | Sbjct 23469 TGGGGGCGTTGGCCTTAATGTTCATTGTATTCGTAGCA-AGGGTACTTTTATCGCCGGAA 23411 Query 363749 CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT---ACTGCGA 363805 | || | || ||||| ||||||||||||| || |||| ||||| || || | Sbjct 23410 CCAATGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGT---ACAATAGCACCGCTA 23354 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 |||| || || |||||||| ||||| || || |||||||| ||||| || || Sbjct 23353 GGTATGTGGATCAGGGTGGCAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGAACCCT 23294 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 || | ||| | || |||| | ||||| || | |||||| ||| ||||| | | Sbjct 23293 GGCACCCTGATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGAGATTC 23234 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 |||| | ||||| || | || || ||| || |||| | ||| ||| || | || | | Sbjct 23233 GTGCTAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCACG 23174 Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045 | | |||| ||| | || | || |||||||| || || || | || |||| Sbjct 23173 ATGATGAGAAGTGGACTTTCATGGATCCTCACGAATGCCCTGGCCTGGCTGACTGCTGGG 23114 Query 364046 GTGACGACTATG--TTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC 364103 | || || | | ||||||||| ||||||||| ||||| | ||| ||||| Sbjct 23113 GAGAGGAGTTCGAAGCGCTCTATAC--CAAGTATGAAAAAGAGGGTCGTGGTCGCAAGAC 23056 Query 364104 AAT 364106 || Sbjct 23055 TAT 23053 Score = 86.0 bits (94), Expect = 2e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 || || ||||| || | |||| ||| | ||||| ||| | ||||| || | |||||| Sbjct 22937 CAAATGGAGACTGGTAATCCCTTCATGGTTTACAAGGATGCCTGCAATCGAAGTTCCAAC 22878 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || || || || |||||| | || ||| || || || |||||||||||||| | Sbjct 22877 CACCAACATCTGGGTACAGTCAAGTGCTCCAATCTTTGCACTGAGATTATTGAATATAGT 22818 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 | ||||| |||||||| || ||||| | ||||| ||| | || || Sbjct 22817 TCCCCCGAGGAGACTGCTGTGTGTAATTTGGCGTCCATCTCACTGCC 22771 >seq1079 Length=19334 Score = 114 bits (126), Expect = 3e-20 Identities = 428/663 (65%), Gaps = 20/663 (3%) Strand=Plus/Plus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || ||||| ||||| |||||||| | | |||||||| | ||| | || || || Sbjct 5172 CCCCAGCACATGTTTATGCGTGTGTCCTTGGGTATCCACGGTGATGATCTCGAAGCTGCC 5231 Query 363514 ATTGAAACATATAAGCTTCTAAGTGCTC----GTGTATTCACGCACGCCACGCCAACAAT 363569 |||| || || | ||||| ||| ||| ||||| || ||| | || || | Sbjct 5232 TTTGAGACGTACCA---TCTAATGTCTCAGAAGTGG-TTCACCCATGCCTCCCCGACTCT 5287 Query 363570 GTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGA 363629 | |||| | || || | | ||| || ||||| || || || || | ||||||||| Sbjct 5288 CTTCAATTCGGGCACACCAATTCCTCAAATGTCGAGCTGTTTCCTACTCACAATGAAGGA 5347 Query 363630 CGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGC 363689 || || |||||||||| || ||||| || | |||||| | || || ||||| || Sbjct 5348 TGACAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAGAACGC 5407 Query 363690 AGGCGGAATTGGTGTATCGATCCACAATGTTCGT-GCACAGAACAGTTACATTCGCGGCA 363748 || || |||| | | || | ||||| ||| || | || || ||| | Sbjct 5408 TGGGGGCGTTGGCCTTAATGTTCATTGTATTCGTAGCA-AGGGTACTTTTATCGCCGGAA 5466 Query 363749 CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT---ACTGCGA 363805 | || | || ||||| ||||||||||||| || |||| ||||| || || | Sbjct 5467 CCAATGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGT---ACAATAGCACCGCTA 5523 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 |||| || || |||||||| ||||| || || |||||||| ||||| || || Sbjct 5524 GGTATGTGGATCAGGGTGGCAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGAACCCT 5583 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 || | ||| | || |||| | ||||| || | |||||| ||| ||||| | | Sbjct 5584 GGCACCCTGATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGAGATTC 5643 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 |||| | ||||| || | || || ||| || |||| | ||| ||| || | || | | Sbjct 5644 GTGCTAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCACG 5703 Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045 | | |||| ||| | || | || |||||||| || || || | || |||| Sbjct 5704 ATGATGAGAAGTGGACTTTCATGGATCCTCACGAATGCCCTGGCCTGGCTGACTGCTGGG 5763 Query 364046 GTGACGACTATG--TTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC 364103 | || || | | ||||||||| ||||||||| ||||| | ||| ||||| Sbjct 5764 GAGAGGAGTTCGAAGCGCTCTATAC--CAAGTATGAAAAAGAGGGTCGTGGTCGCAAGAC 5821 Query 364104 AAT 364106 || Sbjct 5822 TAT 5824 Score = 86.0 bits (94), Expect = 2e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 || || ||||| || | |||| ||| | ||||| ||| | ||||| || | |||||| Sbjct 5940 CAAATGGAGACTGGTAATCCCTTCATGGTTTACAAGGATGCCTGCAATCGAAGTTCCAAC 5999 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || || || || |||||| | || ||| || || || |||||||||||||| | Sbjct 6000 CACCAACATCTGGGTACAGTCAAGTGCTCCAATCTTTGCACTGAGATTATTGAATATAGT 6059 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 | ||||| |||||||| || ||||| | ||||| ||| | || || Sbjct 6060 TCCCCCGAGGAGACTGCTGTGTGTAATTTGGCGTCCATCTCACTGCC 6106 >seq2512 Length=2172 Score = 109 bits (120), Expect = 1e-18 Identities = 346/530 (65%), Gaps = 16/530 (3%) Strand=Plus/Minus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || ||||| ||||| |||||||| | | |||||||| | ||| | || || || Sbjct 523 CCCCAGCACATGTTTATGCGTGTGTCCTTGGGTATCCACGGTGATGATCTCGAAGCTGCC 464 Query 363514 ATTGAAACATATAAGCTTCTAAGTGCTC----GTGTATTCACGCACGCCACGCCAACAAT 363569 |||| || || | ||||| ||| ||| ||||| || ||| | || || | Sbjct 463 TTTGAGACGTACCA---TCTAATGTCTCAGAAGTGG-TTCACCCATGCCTCCCCGACTCT 408 Query 363570 GTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGA 363629 | |||| | || || | | ||| || ||||| || || || || | ||||||||| Sbjct 407 CTTCAATTCGGGCACACCAATTCCTCAAATGTCGAGCTGTTTCCTACTCACAATGAAGGA 348 Query 363630 CGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGC 363689 || || |||||||||| || ||||| || | |||||| | || || ||||| || Sbjct 347 TGACAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAGAACGC 288 Query 363690 AGGCGGAATTGGTGTATCGATCCACAATGTTCGT-GCACAGAACAGTTACATTCGCGGCA 363748 || || |||| | | || | ||||| ||| || | || || ||| | Sbjct 287 TGGGGGCGTTGGCCTTAATGTTCATTGTATTCGTAGCA-AGGGTACTTTTATCGCCGGAA 229 Query 363749 CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT---ACTGCGA 363805 | || | || ||||| ||||||||||||| || |||| ||||| || || | Sbjct 228 CCAATGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGT---ACAATAGCACCGCTA 172 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 |||| || || |||||||| ||||| || || |||||||| ||||| || || Sbjct 171 GGTATGTGGATCAGGGTGGCAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGAACCCT 112 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 || | ||| | || |||| | ||||| || | |||||| ||| ||||| | | Sbjct 111 GGCACCCTGATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGAGATTC 52 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAG 363975 |||| | ||||| || | || || ||| || |||| | ||| ||| || Sbjct 51 GTGCTAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303292764748826