Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12-
11] 3,643 sequences; 182,136,974 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq1091 105 5e-18
>seq1091
Length=18644
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | || ||||| || || |||||||||||||| ||||||||||| |
Sbjct 1492 CCACCACGTAGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAG 1433
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | || || | ||| ||||| ||| | ||||| || |||||||| ||
Sbjct 1432 AGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGA 1373
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||| || ||||| ||| | ||| || | | | || |||| |||||| |
Sbjct 1372 ATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAACT 1313
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| | || || ||||| ||||| || || || |||||||||||||||
Sbjct 1312 TCGAGAGTAATAGTTTTACCGGTGAGAGTCTTCACAAAAATCTGCATT 1265
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 16705 TTACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTC 16764
||| || || || || | || || | ||| || || || |||||||| |||||||||||
Sbjct 1724 TTAACCACCACGAAGGCGAAGCACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTC 1665
Query 16765 GGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824
| | || | || || | ||| ||||| ||| | ||||| |||||||||||
Sbjct 1664 AGAGAGAGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGG 1605
Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884
|| | ||| || ||||| ||| | |||||| | | | || |||| ||||||
Sbjct 1604 GGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTC 1545
Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
||| | || ||||| ||||| || || || || ||||| |||||||||
Sbjct 1544 GACTTCAAGTGTAATGGTCTTTCCTGTGAGAGTCTTAACAAAGATCTGCATT 1493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405070014472570
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |