Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2617 136 3e-27 seq2367 136 3e-27 seq996 136 3e-27 seq851 136 3e-27 seq1091 131 1e-25 seq3456 120 2e-22 seq3269 107 1e-18 seq2487 107 1e-18 seq855 107 1e-18 seq142 107 1e-18 seq62 107 1e-18 seq778 105 4e-18 seq786 84.2 1e-11 >seq2617 Length=1972 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1278 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 1219 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1218 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1184 >seq2367 Length=2544 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2094 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 2035 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2034 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2000 >seq996 Length=24352 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 807 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 866 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 867 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 901 >seq851 Length=36587 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2002 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 2061 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2062 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2096 Score = 107 bits (118), Expect = 1e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| || Sbjct 4993 TTACTCTCTCTTCAGAGTACTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATCGGACT 5052 Query 20004 CGCGGTAATATTTAGCCTT 20022 || || | ||||||||||| Sbjct 5053 CGTGGCAGTATTTAGCCTT 5071 >seq1091 Length=18644 Score = 131 bits (144), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | |||||| ||||| ||||| ||| ||||||||| || ||||| | Sbjct 1496 CATT-CCACCACGTAGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGT 1438 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | ||| | || || | ||| || || ||||| || || |||||||| || | Sbjct 1437 CAGAGAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTG 1378 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | |||||| ||||| ||| || ||| ||||||| || ||||| | | Sbjct 1377 GGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCT 1318 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | |||||||||||||| || | || ||||| || |||||||| Sbjct 1317 CAACTTCGAGAGTAATAGTTTTACCGGTGAGAGTCTTCACAAAAATCTGCAT 1266 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | || | ||| | ||| ||||| |||||||| || ||||| ||||| Sbjct 1721 ACCACCACGAAGGCGAAGCACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 1662 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| | || || | ||| || || ||||| || || || ||||| || | ||| Sbjct 1661 GAGAGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGG 1602 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||| ||||| ||| || ||||||||||| | ||||| | || || Sbjct 1601 AATGCCTTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCGAC 1542 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | |||||| || || || || | || || || || |||||||| Sbjct 1541 TTCAAGTGTAATGGTCTTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 1494 >seq3456 Length=47684 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||| | ||| ||||| ||||||||| |||||||||||||| | ||| | Sbjct 38768 ACGAAGCACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAAAGCGTACGACC 38827 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || |||| || || || ||||| || || ||||||||||| | ||||| ||| || || Sbjct 38828 TTCTTCTAGCTGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTT 38887 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| ||| || |||||| |||| | ||||| | ||||| || | |||||| Sbjct 38888 ATCCTGAATCTTCGACTTCACGTTCTCAATCGTATCACTCGGCTCAACCTCGAGTGTAAT 38947 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || | ||||||||| || || ||||| Sbjct 38948 TGTTTTGCCAGTGAGGGTTTTCACAAAAATTTGCAT 38983 >seq3269 Length=1147 Score = 107 bits (118), Expect = 1e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| || Sbjct 25 TTACTCTCTCTTCAGAGTACTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATCGGACT 84 Query 20004 CGCGGTAATATTTAGCCTT 20022 || || | ||||||||||| Sbjct 85 CGTGGCAGTATTTAGCCTT 103 >seq2487 Length=2226 Score = 107 bits (118), Expect = 1e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| || Sbjct 33 TTACTCTCTCTTCAGAGTACTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATCGGACT 92 Query 20004 CGCGGTAATATTTAGCCTT 20022 || || | ||||||||||| Sbjct 93 CGTGGCAGTATTTAGCCTT 111 >seq855 Length=34863 Score = 107 bits (118), Expect = 1e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| || Sbjct 19624 TTACTCTCTCTTCAGAGTACTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATCGGACT 19565 Query 20004 CGCGGTAATATTTAGCCTT 20022 || || | ||||||||||| Sbjct 19564 CGTGGCAGTATTTAGCCTT 19546 >seq142 Length=94272 Score = 107 bits (118), Expect = 1e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| || Sbjct 90960 TTACTCTCTCTTCAGAGTACTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATCGGACT 91019 Query 20004 CGCGGTAATATTTAGCCTT 20022 || || | ||||||||||| Sbjct 91020 CGTGGCAGTATTTAGCCTT 91038 >seq62 Length=164851 Score = 107 bits (118), Expect = 1e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| || Sbjct 158124 TTACTCTCTCTTCAGAGTACTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATCGGACT 158183 Query 20004 CGCGGTAATATTTAGCCTT 20022 || || | ||||||||||| Sbjct 158184 CGTGGCAGTATTTAGCCTT 158202 >seq778 Length=21138827 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | |||||||||||| ||||| || ||||| || || ||||| || || Sbjct 14606177 ACCACCACGAAGACGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGA 14606118 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| | || |||| || || || ||||| || | ||||||||||| | ||| Sbjct 14606117 GAGAGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGG 14606058 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| || ||| |||||| ||| ||||| | | | |||| | ||||| Sbjct 14606057 AATACCTTCCTTATCCTGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTCAAC 14605998 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| | || |||||||| || || || || || || || |||||||| || Sbjct 14605997 TTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCATTTT 14605947 >seq786 Length=2680382 Score = 84.2 bits (92), Expect = 1e-11 Identities = 74/91 (81%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG--ATAGGGGGT---AATCTCGT 25956 || |||||| | ||||| ||||||||||||||||||| |||| | || ||||||| Sbjct 206859 AACCCCGTTACACTGGCTATGGTTTCGCTAGATAGTAGATATAGAGAGTAGGAATCTCGC 206918 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987 |||| ||||||||||||||||||||| || Sbjct 206919 CAATCTATTCATGCGCGTCACTAATTAGTTG 206949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334932328658333