Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3534 246 4e-60 seq1079 246 4e-60 seq779 226 4e-54 seq2512 221 2e-52 >seq3534 Length=36356 Score = 246 bits (272), Expect = 4e-60 Identities = 424/613 (69%), Gaps = 2/613 (0%) Strand=Plus/Plus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||||||||| |||||||| | |||| ||||| ||||| | ||| ||| || | Sbjct 23100 TTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGGCATTCGTGAGGATCCATGAAAGT 23159 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||||| | ||||| | || | | ||| || |||||||||||||| ||||| | ||| Sbjct 23160 CCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAA 23219 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 |||||||| | | | ||||| ||| || || | || || | |||| || Sbjct 23220 GAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTCTGCGCAGCTCCATGAACTGCAA 23279 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | ||||| ||||| ||||| | ||||| || | | | || || || || || || || Sbjct 23280 GACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACC 23339 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 |||||| | || ||||||||| |||| || |||| | ||| |||| | |||||||| Sbjct 23340 CTGATCCACATACCTAGCGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGA 23399 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63351 | ||||||||| || | |||| | | || || ||||||| | || || || Sbjct 23400 TTCACCATTGGTTCCGGCGATAAAAGTACCCTTGCTACGAATACAATGAACATTAAGGCC 23459 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 | ||||| || | || ||||| || || ||| |||| | ||||| ||||| ||||| Sbjct 23460 AACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTC 23519 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 ||||| |||||| |||| | ||||| |||||||| |||||||| || || || Sbjct 23520 AATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCC 23579 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531 || ||| || | || || || || || || ||||| || | ||| | ||||| |||||| Sbjct 23580 CGAATTGAAGAGAGTCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGT 23639 Query 63532 CTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590 ||||| || | || | ||| || | || || || | | |||||||| ||||||| Sbjct 23640 CTCAAAGGCAGCTTCGAGATCATCACCG-TGGATACCCAAGGACACACGCATAAACATGT 23698 Query 63591 GCTGAGGTCTTTC 63603 |||| ||||| || Sbjct 23699 GCTGGGGTCTCTC 23711 Score = 120 bits (132), Expect = 4e-22 Identities = 314/473 (66%), Gaps = 17/473 (4%) Strand=Plus/Plus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 21708 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 21767 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 || || || || ||||| |||| |||||||| || | || ||| | || Sbjct 21768 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 21827 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || ||| |||| ||||| |||||||| ||||| ||||| | | | |||||||| Sbjct 21828 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 21887 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62080 | | |||||||| || |||||||| ||||| | ||| |||| | ||| ||||| Sbjct 21888 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 21947 Query 62081 TCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTGA 62135 ||||||| || | | ||||| || || | || ||||| || || |||| Sbjct 21948 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 22005 Query 62136 TCTCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--ATTAAC 62190 | ||| ||| | | | | ||| | | |||| | | ||| || ||| || Sbjct 22006 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 22060 Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 | || || |||||||| | || | || | ||| |||||| ||| ||||| Sbjct 22061 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 22120 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 |||||| | ||||| | |||||||||||||||||||| ||||| |||||| Sbjct 22121 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 22173 >seq1079 Length=19334 Score = 246 bits (272), Expect = 4e-60 Identities = 424/613 (69%), Gaps = 2/613 (0%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||||||||| |||||||| | |||| ||||| ||||| | ||| ||| || | Sbjct 5777 TTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGGCATTCGTGAGGATCCATGAAAGT 5718 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||||| | ||||| | || | | ||| || |||||||||||||| ||||| | ||| Sbjct 5717 CCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAA 5658 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 |||||||| | | | ||||| ||| || || | || || | |||| || Sbjct 5657 GAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTCTGCGCAGCTCCATGAACTGCAA 5598 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | ||||| ||||| ||||| | ||||| || | | | || || || || || || || Sbjct 5597 GACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACC 5538 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 |||||| | || ||||||||| |||| || |||| | ||| |||| | |||||||| Sbjct 5537 CTGATCCACATACCTAGCGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGA 5478 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63351 | ||||||||| || | |||| | | || || ||||||| | || || || Sbjct 5477 TTCACCATTGGTTCCGGCGATAAAAGTACCCTTGCTACGAATACAATGAACATTAAGGCC 5418 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 | ||||| || | || ||||| || || ||| |||| | ||||| ||||| ||||| Sbjct 5417 AACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTC 5358 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 ||||| |||||| |||| | ||||| |||||||| |||||||| || || || Sbjct 5357 AATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCC 5298 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531 || ||| || | || || || || || || ||||| || | ||| | ||||| |||||| Sbjct 5297 CGAATTGAAGAGAGTCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGT 5238 Query 63532 CTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590 ||||| || | || | ||| || | || || || | | |||||||| ||||||| Sbjct 5237 CTCAAAGGCAGCTTCGAGATCATCACCG-TGGATACCCAAGGACACACGCATAAACATGT 5179 Query 63591 GCTGAGGTCTTTC 63603 |||| ||||| || Sbjct 5178 GCTGGGGTCTCTC 5166 Score = 120 bits (132), Expect = 4e-22 Identities = 314/473 (66%), Gaps = 17/473 (4%) Strand=Plus/Minus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 7169 TTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 7110 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 || || || || ||||| |||| |||||||| || | || ||| | || Sbjct 7109 GTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCATAGTTGGGC 7050 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || ||| |||| ||||| |||||||| ||||| ||||| | | | |||||||| Sbjct 7049 TCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCA 6990 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62080 | | |||||||| || |||||||| ||||| | ||| |||| | ||| ||||| Sbjct 6989 AGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCTATACAGAGCCTTGATATCA 6930 Query 62081 TCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTGA 62135 ||||||| || | | ||||| || || | || ||||| || || |||| Sbjct 6929 TCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTGGCAATAATTGCCAAT--TTGA 6872 Query 62136 TCTCATCATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGG--ATTAAC 62190 | ||| ||| | | | | ||| | | |||| | | ||| || ||| || Sbjct 6871 GGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTCA--ACATGTGGCTATTGAC 6817 Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 | || || |||||||| | || | || | ||| |||||| ||| ||||| Sbjct 6816 AATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACATTACTCGTAATGGGTTCAGT 6757 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 |||||| | ||||| | |||||||||||||||||||| ||||| |||||| Sbjct 6756 TGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGGGCATTAGTGCCA 6704 >seq779 Length=16055361 Score = 226 bits (250), Expect = 4e-54 Identities = 445/648 (69%), Gaps = 15/648 (2%) Strand=Plus/Minus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 || || || ||||| || |||||||| || |||||||| || | ||||| || || Sbjct 8446775 TGCTTGAAGATCAAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCA 8446716 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 || || ||||| || ||||||| |||||||| || ||||| || || || || ||| Sbjct 8446715 TTACTGAAAGTGAGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAAT 8446656 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 32825 || || || ||||| | || ||||| || ||||| || | || | ||| |||| || Sbjct 8446655 GAACCCGAGAAGAATACACCCTCTACAGCTGCAAACGCCACAACACGCTCCGCATA--CG 8446598 Query 32826 GCGCTGTCAT-GT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 32879 ||| ||| | || |||||| | | |||||||| |||||||| || ||||| ||| Sbjct 8446597 ACGC-GTCTTTGTTCCCGATCCACCTCAGGGCCCAATCCGCCTTCTTCTTCACACACGGC 8446539 Query 32880 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 32939 | ||||| || ||||| ||||| ||| | | ||||| ||||| |||||| Sbjct 8446538 AAAGTCTCAATCGCATTGAAGAGGAAGTCACGCTTGGCAGGCTCTTTCACATAAGTATCA 8446479 Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 || | || ||||| ||||| || || || |||| ||| ||||| | || ||||| Sbjct 8446478 ATGAGGAGTGAGTACATCTCCGAGTGGATATTCTCAACGGCAATTTGCATCCCATAGAAA 8446419 Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC-TGCTAA-ATTTTCATTCA 33057 || | ||| || | || || || ||| || || |||| ||| | ||| || |||| Sbjct 8446418 CAACGAGCTTCAGGGATTTGAACCTCTTGGCAGAA--GTTCATGCAGAGATTCTCGTTCA 8446361 Query 33058 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCT 33116 | || ||||||||||| || || || |||| || || ||||||| | | | | Sbjct 8446360 CGATACCGTCACTGGCAGCGAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCCCCGT 8446301 Query 33117 GGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 33176 || | ||| | ||| ||| ||| |||||| | | || || || ||||| ||||| Sbjct 8446300 CGT-TCAGTCCCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAG 8446242 Query 33177 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 || || ||| | ||||| || || | | |||||| || || |||||||| || | || Sbjct 8446241 AAGGAAGCCACAGCCTTCTTGTAGAACTCCCAGATATCGTGGTATTGAATGGGCATGATT 8446182 Query 33237 ACAAATCTATTTGGATTTTTTGCAAGGATTGGTTCCATAACTAAATTA 33284 ||||| ||| ||||| ||||||| ||||| ||| | ||||| Sbjct 8446181 ACAAACCTACCGGGATTGGGCTCAAGGATGGGTTCGATAGCCTAATTA 8446134 >seq2512 Length=2172 Score = 221 bits (244), Expect = 2e-52 Identities = 366/526 (70%), Gaps = 2/526 (0%) Strand=Plus/Plus Query 63079 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 63138 ||| || |||||||||||||| ||||| | ||| |||||||| | | | ||||| Sbjct 5 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 64 Query 63139 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 ||| || || | || || | |||| || | ||||| ||||| ||||| | || Sbjct 65 TCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATA 124 Query 63199 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63258 ||| || | | | || || || || || || |||||||| | || ||||||||| |||| Sbjct 125 TATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATT 184 Query 63259 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCT 63318 || |||| | ||| |||| | ||||||||| ||||||||| || | |||| | | Sbjct 185 GTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 244 Query 63319 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 || || ||||||| | || || || | ||||| || | || ||||| || Sbjct 245 ACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAA 304 Query 63379 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 63438 || ||| |||| | ||||| ||||| ||||| ||||| |||||| |||| | ||||| Sbjct 305 AGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAG 364 Query 63439 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63498 |||||||| |||||||| || || |||| ||| || | || || || || || Sbjct 365 GAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATG 424 Query 63499 AGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATT 63557 || ||||| || | ||| | ||||| ||||||||||| || | || | ||| || Sbjct 425 GGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACC 484 Query 63558 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 | || || || | | |||||||| ||||||||||| ||||| || Sbjct 485 G-TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633603145982800