Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1091 122 8e-23 seq3456 93.3 4e-14 >seq1091 Length=18644 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| | || || || |||| ||| | ||||| ||| | Sbjct 1493 AATGCAGATCTTTGTTAAGACTCTCACAGGAAAGACCATTACACTTGAAGTCGAGCCCAG 1552 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| ||||| | || | ||| ||||| ||||| ||||| || |||| Sbjct 1553 CGATACCATTGAGAATGTGAAGGCTAAGATTCAA-GACAAGGAAGGCATTCCCCCAGACC 1611 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| |||| ||||| ||||| ||| | ||||||| ||| ||| | || |||| Sbjct 1612 AACAGCGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACTCTCTCTGACTACA 1671 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| ||||| || |||||| | ||||| Sbjct 1672 ACATCCAAAAGGAATCTACTCTACATCTTGTGCT 1705 >seq3456 Length=47684 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || ||| | || ||| |||| || ||| || | Sbjct 38983 ATGCAAATTTTTGTGAAAACCCTCACTGGCAAAACAATTACACTCGAGGTTGAGCCGAGT 38924 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| | || | ||| || || || || || || || || || Sbjct 38923 GATACGATTGAGAACGTGAAGTCGAAGATTCAG-GATAAGGAGGGCATCCCCCCAGATCA 38865 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| || || || ||||||| | ||| || | |||||||| Sbjct 38864 ACAACGACTCATTTTTGCTGGTAAGCAGCTAGAAGAAGGTCGTACGCTTTCTGATTACAA 38805 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| || || || |||||| | ||||| Sbjct 38804 TATCCAAAAGGAGTCGACTCTACATCTTGTGCT 38772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433308760643045