Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq779 224 1e-53 >seq779 Length=16055361 Score = 224 bits (248), Expect = 1e-53 Identities = 499/749 (67%), Gaps = 0/749 (0%) Strand=Plus/Minus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 ||||| |||||| ||||| || |||||||| ||| ||||| |||| | | || Sbjct 8446925 TCAGCGACAAATCTAATGTATTGGCACATCAAACGACAGTTCATGCCTATCAAATCAACG 8446866 Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046 || ||||| || || | ||| || ||| || |||| || || || ||| || Sbjct 8446865 GGAAGAGCTTCAGTGAGGAATTCGCACTCAATCTCAACTGCATCACGCATGATCTCGTAG 8446806 Query 93047 ACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTA 93106 || | || | || || | || || | ||| | || |||||||| || || ||| Sbjct 8446805 ACACGCTTAGCCGACGGCTTGTTCACTACGTGCTTGAAGATCAAGCACGCGAAATCAGTA 8446746 Query 93107 TGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCT 93166 || | ||| || || || ||||||||||| ||||| || | ||| || | | || Sbjct 8446745 TGCAGACCCTCATCGCGGCTAATCAACTCATTACTGAAAGTGAGACCAGGCATTAAACCA 8446686 Query 93167 CGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCT 93226 || ||||| ||||| || ||||| || || ||| || || |||| ||| || || ||| Sbjct 8446685 CGCTTCTTCAGCCAGAAGATTGAGGCGAATGAACCCGAGAAGAATACACCCTCTACAGCT 8446626 Query 93227 GCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCC 93286 ||||| ||||||| ||| || ||| | ||| || | | |||||| | | ||| Sbjct 8446625 GCAAACGCCACAACACGCTCCGCATACGACGCGTCTTTGTTCCCGATCCACCTCAGGGCC 8446566 Query 93287 CAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGC 93346 ||||| || || ||||| | ||| || | || || || || || || ||| | || ||| Sbjct 8446565 CAATCCGCCTTCTTCTTCACACACGGCAAAGTCTCAATCGCATTGAAGAGGAAGTCACGC 8446506 Query 93347 TCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTC 93406 | | | | ||| | || ||||| || | || || ||||| || || |||| |||| Sbjct 8446505 TTGGCAGGCTCTTTCACATAAGTATCAATGAGGAGTGAGTACATCTCCGAGTGGATATTC 8446446 Query 93407 TCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAA 93466 || | |||||||| | || |||||||| | |||||| | ||| || || ||||| | Sbjct 8446445 TCAACGGCAATTTGCATCCCATAGAAACAACGAGCTTCAGGGATTTGAACCTCTTGGCAG 8446386 Query 93467 AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATA 93526 || || |||||| || || || ||||| || || || || ||||||| | Sbjct 8446385 AAGTTCATGCAGAGATTCTCGTTCACGATACCGTCACTGGCAGCGAAGAAAGCCAGAACG 8446326 Query 93527 TGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAA 93586 || |||||||| ||| | || || || ||||| || | |||||||| | Sbjct 8446325 TGGGAGATAAAATGACGCTCCCCGTCGTTCAGTCCCTCCCAGTCAGTGAGATCTTTCGTC 8446266 Query 93587 AGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATG 93646 | || || || || || ||||| || || || | || || ||||| | ||||| || Sbjct 8446265 AAGTCAACCTCCTCCACGGTCCAGAAGGAAGCCACAGCCTTCTTGTAGAACTCCCAGATA 8446206 Query 93647 TCTTGATATTGAATTGGAAATATGACAAA 93675 || || |||||||| || | || ||||| Sbjct 8446205 TCGTGGTATTGAATGGGCATGATTACAAA 8446177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556835441951320