Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq781 109 1e-18 seq779 96.9 7e-15 seq780 84.2 4e-11 >seq781 Length=13122981 Score = 109 bits (120), Expect = 1e-18 Identities = 298/455 (65%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 218563 GAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTT 218622 || |||||||||||| |||||||||| | || || ||| | ||| |||| || Sbjct 8954955 GAACGTTCTATTCCCTCTTTGGTGGATGGTTTAAAACCCGGCCAGAGAAAGGTCCTTTTC 8955014 Query 218623 GCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTA 218682 || || || || || | ||| ||||||| ||||| ||| || | ||| |||| Sbjct 8955015 ACCTGTTTGAAACGCAATCAGGTGAAAGAAATCAAGGTGCATCAATTGTGCGGTGCTGTA 8955074 Query 218683 TCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATG 218742 || ||||| || ||| || || |||||| | ||| ||| | ||||| | || Sbjct 8955075 TCAGAAATGTCCTCCTATCACCATGGTGAGGCGTCGCTGATGGGAACTATTGTTAACCTG 8955134 Query 218743 GCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 || ||||| | ||| || ||| || | || | ||||| |||| ||||||||| ||| Sbjct 8955135 GCTCAGGATTTTGTTGGTTCTAATAATCTCAATCTTCTGCTTCCCATCGGTCAGTTCGGT 8955194 Query 218803 TCTCGTCTATTG---GGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTG 218859 | || |||| ||||| || ||| |||||| || | || ||||| || ||| Sbjct 8955195 ACCCG---ATTGGCCGGTGGTAAAGATTCCGCTTCTTCCCGTTACATCTTCACGGCTTTG 8955251 Query 218860 TCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAG 218919 || ||| | | ||||| || | |||||| | |||| || || ||| | Sbjct 8955252 AGTCCTCTGAGTAGAAAATTGTTCCATGAACACGATGACGCTATCCTCAATTACCTTCAT 8955311 Query 218920 GACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTA 218979 || || | |||||| |||||||||||| | ||| |||||| | | ||| | Sbjct 8955312 GATGACAATCAGAAGATTGAACCCGAGTGGTATATCCCTATTATTCCTATGGTTCTCATT 8955371 Query 218980 AATGGTGCCAATGGTATCGGGACAGGGTTCAGTAC 219014 || ||||| | || || || || |||| ||||| Sbjct 8955372 AACGGTGCGGAGGGCATTGGTACCGGGTGGAGTAC 8955406 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 3955100 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3955041 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3955040 CCCACGTTGGGC 3955029 >seq779 Length=16055361 Score = 96.9 bits (106), Expect = 7e-15 Identities = 352/539 (65%), Gaps = 24/539 (4%) Strand=Plus/Minus Query 251845 TGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCA 251904 ||||||||||| ||||| || || ||||| || | | || |||||||| | ||| Sbjct 8446745 TGCAGACCCTCATCGCGGCTAATCAACTCATTACTGAAAGTGAGACCAGGCATTAAACCA 8446686 Query 251905 CGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACAC 251964 || ||| | ||||||||||||| | || || || ||||| | | |||||| ||| Sbjct 8446685 CGCTTCTTCAGCCAGAAGATTGAGGCGAATGAACCCGAGAAGAATACACCCTCTACAGCT 8446626 Query 251965 ACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA---ACTTCTGTGCC 252021 | | || |||| ||||| ||| ||||| ||| | | || || || | ||| Sbjct 8446625 GCAAACGCCACAACACGCTCCGCATACGACGCGTCTTTGTTCCCGATCCACCTCAGGGCC 8446566 Query 252022 CATGCTGCCTTCTT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCG 252080 || | |||||||| | || | | || | || || || |||| ||||| ||| || Sbjct 8446565 CAATCCGCCTTCTTCTTCACACAC-GGCAAAGTCTCAATCGCATTGAAGAGGAAGTCACG 8446507 Query 252081 CTCGGCA---TCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGAT 252137 || |||| || | | | || | | ||||| ||||| |||||||||||||| ||||| Sbjct 8446506 CTTGGCAGGCTCTTTCAC-ATAA--GTATCAATGAGGAGTGAGTACATCTCCGAGTGGAT 8446450 Query 252138 GGATTCGTTGAAC----ATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTT 252193 |||| | ||| || || ||||||| ||| || |||| || | Sbjct 8446449 --ATTC--TCAACGGCAATTTGCATCCCATAGAAACAACGAGCTTCAGGGATTTGAACCT 8446394 Query 252194 CCGTGGAAAAGTTGTTTGCA-ATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAG 252252 | | | ||||| |||| | ||||| |||| || || || ||| | || ||||| Sbjct 8446393 CTTGGCAGAAGTT-CATGCAGAGATTCTCGTTCACGATACCGTCACTGGCAGCGAAGAAA 8446335 Query 252253 CCAAGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCA 252312 | |||| | ||| || |||||||| ||||||| || || |||||| | Sbjct 8446334 GCCAGAACGTGGGAGATAAAATGACGCTCCCCGTCGTTCAGTCCCTC---CCAGTCAGTG 8446278 Query 252313 ATGTCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTA 252371 | || | ||| ||| || ||||| |||||||| | | ||| ||||||||||| Sbjct 8446277 AGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAGGAAGCCACAGCCTTCTTGTA 8446219 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 251526 CATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTC 251585 ||| || || | |||||| ||||||| ||||| || |||||||| | ||||||||| Sbjct 8447140 CATAACGCCCGCACGTTGGTATTCAGCAACACGCTTCTCAAAGAAATTGGTCTTGCCCTC 8447081 Query 251586 CAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTA 251630 ||||||||| |||||| || ||||||||||| || | ||||| Sbjct 8447080 CAGAGAGATGTTCTCCATAAAATCGAAGGGGTTGGTATCCTTGTA 8447036 >seq780 Length=14665888 Score = 84.2 bits (92), Expect = 4e-11 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 117789 CGATAATCTTCGTCAATCACCCCGGCAAGAACGTCGATACCATATTTGTAGGC-CAAACC 117847 || ||||| | ||||| || |||||| ||| || |||||||||||| |||| |||||| Sbjct 11041556 CGGTAATCCTGATCAATAACACCGGCACCAACATCAATACCATATTTG-AGGCACAAACC 11041614 Query 117848 GCTGCGAGGAGCAATTCGGCCATAAGTTCCAGATGGAA 117885 ||||||||||||||||| ||||| |||| ||||| Sbjct 11041615 ACTGCGAGGAGCAATTCGACCATAGCAACCAGGTGGAA 11041652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027788824753763