Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1091 143 2e-29 seq778 102 7e-17 >seq1091 Length=18644 Score = 143 bits (158), Expect = 2e-29 Identities = 174/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 114149 ACAAAT--ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTG 114206 |||||| ||| ||||| || | | || | ||||| |||||||| ||||| |||||| Sbjct 1729 ACAAATTAACCACCACGAAGGCGAAGCACAAGATGTAGAGTAGATTCCTTTTGGATGTTG 1670 Query 114207 TAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGG 114266 || || | ||||||| |||||||||||| || ||||| |||| |||||||||||| Sbjct 1669 TAGTCAGAGAGAGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGG 1610 Query 114267 TCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTG 114326 || || ||||||||||| ||||| |||||| || | | |||| ||| ||| || Sbjct 1609 TCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATGGTATCGCTG 1550 Query 114327 GATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| || | || | || || || || ||||| || ||||| |||||||| Sbjct 1549 GGCTCGACTTCAAGTGTAATGGTCTTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 1494 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | ||| || || || | || || || ||||| |||||||| || Sbjct 1495 ATTCCACCACGTAGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCA 1436 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||||||||| || ||||| |||| ||||| |||||||| || Sbjct 1435 GAGAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGG 1376 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| |||| | || | ||| ||| ||| || Sbjct 1375 GGAATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCA 1316 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| ||||| || |||||||||||||| Sbjct 1315 ACTTCGAGAGTAATAGTTTTACCGGTGAGAGTCTTCACAAAAATCTGCAT 1266 >seq778 Length=21138827 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 || ||| ||||| || | ||| || || || | |||||||| || || |||||||| || Sbjct 14606180 AACACCACCACGAAGACGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTC 14606121 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | |||||| |||||| || || || ||||| |||| | ||| ||||| || || Sbjct 14606120 CGAGAGAGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGG 14606061 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| || || ||| || |||| | ||||| || || | | || Sbjct 14606060 GGGAATACCTTCCTTATCCTGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTC 14606001 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||||| || | ||| || |||||||||||||| Sbjct 14606000 AACTTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCAT 14605950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420115746426516