Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq779 163 5e-35 seq3534 102 2e-16 seq1079 102 2e-16 >seq779 Length=16055361 Score = 163 bits (180), Expect = 5e-35 Identities = 458/699 (66%), Gaps = 17/699 (2%) Strand=Plus/Plus Query 42292 ACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGA 42351 |||| || |||||| | ||||||||||| | ||| |||||||| |||||| Sbjct 8446199 ACCACGATATCTGGGAGTTCTACAAGAAGGCTGTGGCTTCCTTCTGGACCGTGGAGGAGG 8446258 Query 42352 TTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTT 42407 ||||| || | || || | | ||||||| |||| || || || | ||| Sbjct 8446259 TTGACTTGACGAAAGATCTCACTGACTGGGAGGGACTGAACGACGGGGAGCGTCA--TTT 8446316 Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 | ||| | | | ||||| |||||||| ||| |||||| || || || ||||| || Sbjct 8446317 TATCTCCCA--CGTTCTGGCTTTCTTCGCTGCCAGTGACGGTATCGTGAACGAGAATCTC 8446374 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAG 42527 || | ||| ||||||| || | ||| || || || ||||| || | || Sbjct 8446375 TGCATGAACTTCTGCCAAGAGGTTCAAATCCCTGAAGCTCGTTGTTTCTATGGGATGCAA 8446434 Query 42528 ATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATC 42584 || ||| | ||||| | ||||| ||| ||||| | ||| |||| | || || | Sbjct 8446435 ATTGCCGTTGAGAATATCCACTCGGAGATGTACTC---ACTCCTCATTGATACTTATGTG 8446491 Query 42585 CTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAG 42644 || || | | ||||| || || ||||| || || ||||| |||| || | ||| Sbjct 8446492 AAAGAGCCTGCCAAGCGTGACTTCCTCTTCAATGCGATTGAGACTTTGCCGTGTGTGAAG 8446551 Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 ||||||||||| ||||| || | ||||||| || ||||| ||| | ||| | Sbjct 8446552 AAGAAGGCGGATTGGGCCCTGAGGTGGATCGGGAACAAAGACGCGTCGTATGCGGAGCGT 8446611 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 | || || ||| | || || ||||| | ||||||||||| | |||||||| |||||| Sbjct 8446612 GTTGTGGCGTTTGCAGCTGTAGAGGGTGTATTCTTCTCGGGTTCATTCGCCTCAATCTTC 8446671 Query 42765 TGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 ||||| ||| || | | ||||| || ||||| ||| || || | || ||| | Sbjct 8446672 TGGCTGAAGAAGCGTGGTTTAATGCCTGGTCTCACTTTCAGTAATGAGTTGATTAGCCGC 8446731 Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG 42884 || ||||| ||||||| || || || || | || ||| | ||| | | ||||| Sbjct 8446732 GATGAGGGTCTGCATACTGATTTCGCGTG---CTTGATCTTCAAGCACGTAGTGAACAAG 8446788 Query 42885 CCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 || ||| |||| ||| | ||||| || || || ||||| ||| || ||| Sbjct 8446789 CCGTCGGCTAAGCGTGTCTACGAGATCATGCGTGATGCAGTTGAGATTGAGTGCGAATTC 8446848 Query 42945 CTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC 42983 ||||| | | || ||||| || | ||||||||| Sbjct 8446849 CTCACTGAAGCTCTTCCCGTTGATTTGATAGGCATGAAC 8446887 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||||||||| ||||||||||||||||| |||||||||||||||| || || |||||||| Sbjct 8447050 CCCCTTCGATTTTATGGAGAACATCTCTCTGGAGGGCAAGACCAATTTCTTTGAGAAGCG 8447109 Query 43130 CGTCGCCGACTACCA 43144 || || || ||||| Sbjct 8447110 TGTTGCTGAATACCA 8447124 >seq3534 Length=36356 Score = 102 bits (112), Expect = 2e-16 Identities = 376/584 (64%), Gaps = 10/584 (2%) Strand=Plus/Plus Query 244858 CCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTA 244917 ||||| ||| |||| | | ||| ||||| | |||||| || || ||| || Sbjct 23034 CCAGACTTCCTGAGCCCTCATAGTCTTGCGACCACGACCCTCTTTTTCATACTTGGTATA 23093 Query 244918 CAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACAT 244977 || || |||||||| |||||| || | ||||| ||||| || ||| Sbjct 23094 GAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGGCATTCGTGAGGATCCAT 23153 Query 244978 GAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGC 245037 || | |||||| | | || | |||||||||||||| || || || |||||||| || Sbjct 23154 GAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGC 23213 Query 245038 CTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAA 245097 | ||||| || || | | ||| || | || ||||| | | |||||||| || Sbjct 23214 CAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTCTGCGCAGCTCCATGAA 23273 Query 245098 GTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTT 245157 | ||||| || ||||||||| || | || | ||| | || ||||| ||||| || Sbjct 23274 CTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATT 23333 Query 245158 GCCTCCCTGGTCCACCATCCTCTCGAGCGC-GTTGAAGATGCGCAGGGTAGGCACTATGC 245216 ||| ||||| ||||| ||| || | || ||| | | || || | || || | || Sbjct 23334 GCCACCCTGATCCACATACCTAGCG-GTGCTATTGTACACTCGGAGCATGGGAACCAAGC 23392 Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGG 245276 | || || | || ||||| || ||| | | |||||| || | | | ||| Sbjct 23393 CATTGGATTCACCATTGGTTCCGGCGATAAAAGTACCCTTG---CTACGAATAC-AATGA 23448 Query 245277 ACAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCT 245332 |||| ||| | || || |||| ||| ||||| | || || |||| || || Sbjct 23449 ACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCG 23508 Query 245333 GCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGC 245392 || ||||| || ||||| |||||| |||| || || ||| |||| || || Sbjct 23509 TAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGA 23568 Query 245393 TTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 | || ||| ||| ||||| ||||| ||| ||| ||||| || Sbjct 23569 ATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTGAA 23612 >seq1079 Length=19334 Score = 102 bits (112), Expect = 2e-16 Identities = 376/584 (64%), Gaps = 10/584 (2%) Strand=Plus/Minus Query 244858 CCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTA 244917 ||||| ||| |||| | | ||| ||||| | |||||| || || ||| || Sbjct 5843 CCAGACTTCCTGAGCCCTCATAGTCTTGCGACCACGACCCTCTTTTTCATACTTGGTATA 5784 Query 244918 CAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACAT 244977 || || |||||||| |||||| || | ||||| ||||| || ||| Sbjct 5783 GAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGGCATTCGTGAGGATCCAT 5724 Query 244978 GAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGC 245037 || | |||||| | | || | |||||||||||||| || || || |||||||| || Sbjct 5723 GAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGC 5664 Query 245038 CTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAA 245097 | ||||| || || | | ||| || | || ||||| | | |||||||| || Sbjct 5663 CAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTCTGCGCAGCTCCATGAA 5604 Query 245098 GTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTT 245157 | ||||| || ||||||||| || | || | ||| | || ||||| ||||| || Sbjct 5603 CTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATT 5544 Query 245158 GCCTCCCTGGTCCACCATCCTCTCGAGCGC-GTTGAAGATGCGCAGGGTAGGCACTATGC 245216 ||| ||||| ||||| ||| || | || ||| | | || || | || || | || Sbjct 5543 GCCACCCTGATCCACATACCTAGCG-GTGCTATTGTACACTCGGAGCATGGGAACCAAGC 5485 Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGG 245276 | || || | || ||||| || ||| | | |||||| || | | | ||| Sbjct 5484 CATTGGATTCACCATTGGTTCCGGCGATAAAAGTACCCTTG---CTACGAATAC-AATGA 5429 Query 245277 ACAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCT 245332 |||| ||| | || || |||| ||| ||||| | || || |||| || || Sbjct 5428 ACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCACATTGTTTGAGTGTATCG 5369 Query 245333 GCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGC 245392 || ||||| || ||||| |||||| |||| || || ||| |||| || || Sbjct 5368 TAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAACAGCTCGACATTTGAGGA 5309 Query 245393 TTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 | || ||| ||| ||||| ||||| ||| ||| ||||| || Sbjct 5308 ATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTGAA 5265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944296197153680