Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1091 134 3e-26 seq3456 105 2e-17 seq779 84.2 5e-11 >seq1091 Length=18644 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || ||||| | || ||| |||||||| || ||||| | | Sbjct 1720 CCACCACGAAGGCGAAGCACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 1661 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||| || || || ||||| ||||||||||| |||||| Sbjct 1660 AGAGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTG---GTCTGGG 1604 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || || || || || ||||| || || || | |||||| | || Sbjct 1603 GGAATGCCTTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCG 1544 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || || ||||| || || |||||||| || || ||||||||| Sbjct 1543 ACTTCAAGTGTAATGGTCTTTCCTGTGAGAGTCTTAACAAAGATCTGCATT 1493 >seq3456 Length=47684 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || ||||| | || || ||||||||||| || || | Sbjct 38757 CCGCCACGAAGACGAAGCACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAA 38816 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 ||||| || || ||||||| || || || || || || || || ||||| |||| Sbjct 38817 AGCGTACGACCTTCTTCTAGCTGCTTACCAGCAAAAATGAGTCGTTGTTG---ATCTGGG 38873 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || |||||||| || |||| |||||||| || || | ||| |||| || Sbjct 38874 GGGATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTCTCAATCGTATCACTCGGCTCA 38933 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || || || || || || || || || || ||||| Sbjct 38934 ACCTCGAGTGTAATTGTTTTGCCAGTGAGGGTTTTCACAAAAATTTGCAT 38983 >seq779 Length=16055361 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/189 (71%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 268465 CCCATTCAATATCATGATCTGTGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGGACC 268524 ||||||||||| || ||| | ||| | | ||||||||||| ||||| |||| |||||| Sbjct 8446189 CCCATTCAATACCACGATATCTGGGAGTTCTACAAGAAGGCTGTGGCTTCCTTCTGGACC 8446248 Query 268525 ACCGAGGAAGTTCCTCTTAACG-CAGACGTTGCAGACTGGCGTGAGAAACTGAACAACGA 268583 ||||| ||| ||| ||| ||| | | |||||| ||| ||||||| ||| Sbjct 8446249 GTGGAGGAGGTT-GACTTGACGAAAGATCTCACTGACTGG---GAGGGACTGAACGACGG 8446304 Query 268584 TGAACGACACTTCATCAAACATATTCTGGGGTTCTTTGCAGGCTCCGACGGTATCGTGAT 268643 || || || || ||| || |||||| ||||| || | | ||||||||||||| Sbjct 8446305 GGAGCGTCATTTTATCTCCCACGTTCTGGCTTTCTTCGCTGCCAGTGACGGTATCGTGAA 8446364 Query 268644 GGAAAATCT 268652 || ||||| Sbjct 8446365 CGAGAATCT 8446373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179599338524954