Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3534 131 2e-25 seq1079 131 2e-25 seq2512 125 9e-24 seq779 104 3e-17 >seq3534 Length=36356 Score = 131 bits (144), Expect = 2e-25 Identities = 423/648 (65%), Gaps = 9/648 (1%) Strand=Plus/Plus Query 114683 CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAG 114742 || ||||| | || ||||| || ||||| ||||| ||||| || ||| | || | Sbjct 23068 CGACCCTCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCC 23127 Query 114743 AGCCCTGGTGCCTTA-TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTT 114801 || || || || || | || | || || ||| | || | || | ||| | || Sbjct 23128 AGGCCAGG-GCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTG 23186 Query 114802 CATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 114861 |||||| || || || ||||||||||| | |||||||| | | ||| || ||| | Sbjct 23187 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 23246 Query 114862 CCCC-TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGT 114920 || || || | |||| ||||| || | || || ||| | |||||| ||||| || | Sbjct 23247 TCCGGTGTTTCTG-CGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGAT 23305 Query 114921 ACACCGCGATTGACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCTGTGGCAT 114977 | | || | | || ||| | ||| |||| | |||||||| || ||| || Sbjct 23306 ATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTAT 23365 Query 114978 TAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG 115037 | | || || ||||| |||| | |||| |||| ||||| || || ||| || Sbjct 23366 TGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAG 23425 Query 115038 ACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 115097 ||| | | | ||| | | | |||| ||||| || ||||||||| Sbjct 23426 TACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCA 23485 Query 115098 GCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAA 115157 || || | |||| | ||||||| || || || |||| |||| ||| || | Sbjct 23486 AAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTA 23545 Query 115158 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 115217 |||| |||||||||||||| || ||||||| || | |||||||| || || | || | Sbjct 23546 GGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCAT 23605 Query 115218 GGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCC 115276 || ||||| || | || ||||| || ||| ||||| ||| | || | || || Sbjct 23606 GGGTGAAC-CACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCA 23664 Query 115277 CCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 115324 ||||| ||||| | || || ||||||||||||| |||||| | ||| Sbjct 23665 CCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCC 23712 >seq1079 Length=19334 Score = 131 bits (144), Expect = 2e-25 Identities = 423/648 (65%), Gaps = 9/648 (1%) Strand=Plus/Minus Query 114683 CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAG 114742 || ||||| | || ||||| || ||||| ||||| ||||| || ||| | || | Sbjct 5809 CGACCCTCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCC 5750 Query 114743 AGCCCTGGTGCCTTA-TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTT 114801 || || || || || | || | || || ||| | || | || | ||| | || Sbjct 5749 AGGCCAGG-GCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTG 5691 Query 114802 CATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 114861 |||||| || || || ||||||||||| | |||||||| | | ||| || ||| | Sbjct 5690 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 5631 Query 114862 CCCC-TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGT 114920 || || || | |||| ||||| || | || || ||| | |||||| ||||| || | Sbjct 5630 TCCGGTGTTTCTG-CGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGAT 5572 Query 114921 ACACCGCGATTGACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCTGTGGCAT 114977 | | || | | || ||| | ||| |||| | |||||||| || ||| || Sbjct 5571 ATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTAT 5512 Query 114978 TAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG 115037 | | || || ||||| |||| | |||| |||| ||||| || || ||| || Sbjct 5511 TGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAG 5452 Query 115038 ACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 115097 ||| | | | ||| | | | |||| ||||| || ||||||||| Sbjct 5451 TACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCA 5392 Query 115098 GCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAA 115157 || || | |||| | ||||||| || || || |||| |||| ||| || | Sbjct 5391 AAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTA 5332 Query 115158 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 115217 |||| |||||||||||||| || ||||||| || | |||||||| || || | || | Sbjct 5331 GGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCAT 5272 Query 115218 GGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCC 115276 || ||||| || | || ||||| || ||| ||||| ||| | || | || || Sbjct 5271 GGGTGAACC-ACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCA 5213 Query 115277 CCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 115324 ||||| ||||| | || || ||||||||||||| |||||| | ||| Sbjct 5212 CCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCC 5165 >seq2512 Length=2172 Score = 125 bits (138), Expect = 9e-24 Identities = 350/531 (66%), Gaps = 7/531 (1%) Strand=Plus/Plus Query 114799 CTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTC 114858 || |||||| || || || ||||||||||| | |||||||| | | ||| || || Sbjct 2 CTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTC 61 Query 114859 ATCCCCC-TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCA 114917 | | || || || | |||| ||||| || | || || ||| | |||||| ||||| | Sbjct 62 AGCTCCGGTGTTTCTG-CGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTA 120 Query 114918 GGTACACCGCGATTGACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCTGTGG 114974 | || | || | | || ||| | ||| |||| | |||||||| || ||| Sbjct 121 GATATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGC 180 Query 114975 CATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATAC 115034 ||| | || || ||||| |||| | |||| |||| ||||| || || ||| Sbjct 181 TATTGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAA 240 Query 115035 GAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 115094 || ||| | | | ||| | | | |||| ||||| || |||||||| Sbjct 241 AAGTACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGA 300 Query 115095 TTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGA 115154 | || || | |||| | ||||||| || || || |||| |||| ||| || Sbjct 301 TCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGA 360 Query 115155 TAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 115214 ||||| |||||||||||||| || ||||||| || | |||||||| || || | | Sbjct 361 GTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGG 420 Query 115215 CGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCT 115273 | ||| ||||| || | || ||||| || ||| ||||| ||| | || | || Sbjct 421 CATGGGTGAAC-CACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCA 479 Query 115274 TCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 115324 || ||||| ||||| | || || ||||||||||||| |||||| | ||| Sbjct 480 TCACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCC 530 >seq779 Length=16055361 Score = 104 bits (114), Expect = 3e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || |||||||| || ||| || | ||||| ||| || || ||||| | ||| Sbjct 8446745 TGCAGACCCTCATCGCGGCTAATCAACTCATTACTGAAAGTGAGACCAGGCATTAAACCA 8446686 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 |||||||||| |||||| || | ||||||||||||||||| | ||||| ||| Sbjct 8446685 CGCTTCTTCAGCCAGAAGATTGAGGCGAATGAACCCGAGAAGAATACACCCTCTACAGCT 8446626 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAACCACTTCATCGC 126237 || ||||| | | |||||| ||| | || |||| ||||| | | | |||| ||| || Sbjct 8446625 GCAAACGCCACAACACGCTCCGCATACGA-CGCGTCTTTGTTCCCGATCCACCTCAGGGC 8446567 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 ||| | |||||| |||| | |||||| | |||| ||||| | ||||| Sbjct 8446566 CCAATCCGCCTTCTTCTTCACACACGGCAAAGTCTCAATCGCATTGAAGAG 8446516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597326398010440