Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3456 116 4e-21 >seq3456 Length=47684 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| ||||||||||||| || || || | || ||||||||||||||||| || Sbjct 38792 CTCCTTTTGGATATTGTAATCAGAAAGCGTACGACCTTCTTCTAGCTGCTTACCAGCAAA 38851 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 |||||||| || || || | || | || |||||| ||| ||| | || | || | Sbjct 38852 AATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTATCC-TGAATCTTCGACTTCACGT 38910 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | ||| || |||| || || |||| || || |||||||| || || || || | Sbjct 38911 TCTCAATCGTATCACTCGGCTCAACCTCGAGTGTAATTGTTTTGCCAGTGAGGGTTTTCA 38970 Query 42196 CAAAGATTTGCAT 42208 |||| |||||||| Sbjct 38971 CAAAAATTTGCAT 38983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543188063447120