Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3456 104 2e-17 seq778 100 3e-16 >seq3456 Length=47684 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | |||||| ||||| | ||||| || ||||| || |||||||| | Sbjct 38756 ACCGCCACGAAGACGAAGCACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGA 38815 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || ||| ||||||| || || || || || || Sbjct 38816 AAGCGTACGACCTTCTTCTAGCTGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGG 38875 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCA 64394 || || || || || || || || ||| || ||| | ||||||| |||| || | Sbjct 38876 GATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTCTCAATCGTATCACTCGGC-TCAA 38934 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | || ||||| || | ||||| || ||||||||||| Sbjct 38935 CCTCGAGTGTAATTGTTTTGCCAGTGAGGGTTTTCACAAAAATTTGCAT 38983 >seq778 Length=21138827 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| || || |||||||| || | || || || | ||||| |||||| Sbjct 14606152 TGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCCATCTTCTAGCTGC 14606093 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| ||| | || | || || || || || ||||| ||||| || || || ||||| Sbjct 14606092 TTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCCTGAATTTTG 14606033 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||||||| || | | ||| | || ||||| | ||| | || ||||| || Sbjct 14606032 GCCTTTACATTTTCAATGGAATCTGAAGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTT 14605973 Query 64421 AAAGTTTTTACGAAAATTTGCATTTTAA 64448 ||||| || || ||||| |||||||||| Sbjct 14605972 AAAGTCTTGACAAAAATCTGCATTTTAA 14605945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499622047424920