Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3534 86.0 6e-12 seq1079 86.0 6e-12 >seq3534 Length=36356 Score = 86.0 bits (94), Expect = 6e-12 Identities = 124/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 94484 TGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGT-CCAACCAG 94542 ||||||| |||| |||| ||| | | |||||| | ||| | |||| ||||||| Sbjct 22933 TGGAGACTGGTAATCCCTTCATGGTTTACAAGGATGCCTGCAAT-CGAAGTTCCAACCAC 22875 Query 94543 CAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCT 94602 || || || || ||||| |||| ||||| ||||| |||||| | || |||| ||| Sbjct 22874 CAACATCTGGGTACAGTCAAGTGCTCCAATCTTTGCACTGAGATTATTGAATATAGTTCC 22815 Query 94603 CCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCC-ACTTT 94652 || || |||| |||||||||||| ||| |||||| ||| || ||||| Sbjct 22814 CCCGAGGAGACTGCTGTGTGTAATTTGGCGTCCATCTCACTGCCCAACTTT 22764 >seq1079 Length=19334 Score = 86.0 bits (94), Expect = 6e-12 Identities = 124/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 94484 TGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGT-CCAACCAG 94542 ||||||| |||| |||| ||| | | |||||| | ||| | |||| ||||||| Sbjct 5944 TGGAGACTGGTAATCCCTTCATGGTTTACAAGGATGCCTGCAAT-CGAAGTTCCAACCAC 6002 Query 94543 CAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCT 94602 || || || || ||||| |||| ||||| ||||| |||||| | || |||| ||| Sbjct 6003 CAACATCTGGGTACAGTCAAGTGCTCCAATCTTTGCACTGAGATTATTGAATATAGTTCC 6062 Query 94603 CCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCC-ACTTT 94652 || || |||| |||||||||||| ||| |||||| ||| || ||||| Sbjct 6063 CCCGAGGAGACTGCTGTGTGTAATTTGGCGTCCATCTCACTGCCCAACTTT 6113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494700671542280