Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1091 111 2e-19 seq778 89.7 5e-13 >seq1091 Length=18644 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | | ||||||||||| ||||||||||| Sbjct 1492 CCACCACGTAGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAG 1433 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||| || || | | |||| ||||| |||||||| || || Sbjct 1432 AGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGA 1373 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | || | |||| | || | ||| ||| | | ||| || Sbjct 1372 ATGCCTTCCTTGTCT-TGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAAC 1314 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||| || ||||| || |||||||||||||| Sbjct 1313 TTCGAGAGTAATAGTTTTACCGGTGAGAGTCTTCACAAAAATCTGCAT 1266 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||||||||| | |||||| || || ||||| || || | | Sbjct 1687 GATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCAAGTTGCTTGCCAGCA 1628 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| |||||||||||||| || || || ||||| ||||| ||| | || | || | Sbjct 1627 AAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTC-TTGAATCTTAGCCTTCAC 1569 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| ||| | | ||| || || | || | || || || || ||||| || Sbjct 1568 ATTCTCAATGGTATCGCTGGGCTCGACTTCAAGTGTAATGGTCTTTCCTGTGAGAGTCTT 1509 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 1508 AACAAAGATCTGCAT 1494 >seq778 Length=21138827 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | | | || ||||| || ||||||||||| Sbjct 14606176 CCACCACGAAGACGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAG 14606117 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || || || || || | | |||| | ||| ||||| || || || Sbjct 14606116 AGAGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGA 14606057 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| |||| | |||| | ||| | || || | | ||| || Sbjct 14606056 ATACCTTCCTTATCC-TGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTCAAC 14605998 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| | ||| || |||||||||||||| Sbjct 14605997 TTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCAT 14605950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496239801450960